[Fri Aug 26 18:18:29 2016] >Input file: TMA0A0H3M3C1M1D.pdb >TM segments: 18-53 MAIDEN score = -0.7576 Below is the ranking list of the residue pairs and their related pseudo-energy (the lower, the better). This includes inter-chain residue pairs. The maximum (least favorable) pairwise energy value has been set to 10. See the MAIDEN software article: Postic,G., Ghouzam,Y. and Gelly,J.C. (2015) Biochimie, 115, 155–161. ----------- ---------------- Calpha pair Empirical energy ----------- ---------------- I44 -L49 10 I44 -W50 1.02590032740868 A40 -P51 1.01725081908725 A41 -W50 0.793635021751988 A40 -W50 0.535437333848349 F39 -A48 0.53284745950271 R43 -A48 0.50839369604649 A45 -W50 0.435461164106682 I32 -F37 0.407342038707644 F39 -I44 0.390619272966112 P36 -W50 0.36249498822349 P36 -S46 0.336771817168761 F39 -Y47 0.336625116598574 A41 -L49 0.291510614510809 T34 -P51 0.270359654227869 S46 -P51 0.252717533406184 R43 -L49 0.231347553094628 C28 -G38 0.214782139428213 G38 -L49 0.210471750600698 A40 -Y47 0.189313829492191 G38 -R43 0.185644101795759 L42 -Y47 0.182302617866469 L42 -P51 0.168804472039445 G38 -W50 0.158288615071783 F37 -S46 0.158027165911863 G38 -P51 0.132570151671836 T34 -A48 0.130025039112885 G38 -A45 0.115885595797081 A24 -L30 0.1152353212152 A40 -G53 0.0955937890315814 L26 -I35 0.0911660932375058 C28 -F37 0.0906168467380439 A24 -L31 0.0889157476607245 L30 -A40 0.0867833920925651 L22 -L30 0.077595510428722 V27 -I35 0.0730569944480015 L31 -F37 0.0715663470921344 I33 -P51 0.0617544629985829 P36 -L49 0.0529308256980965 R43 -P51 0.049745857274323 A48 -G53 0.0450075461791917 A18 -L26 0.0433106358585587 L42 -L49 0.0430804722640943 I35 -R43 0.0399662105238576 Y21 -L26 0.0342273953265639 G38 -S46 0.0319687080870625 L31 -F39 0.029755613187878 L23 -L30 0.0262019637484094 L26 -T34 0.0237653414587902 I35 -L49 0.0225272355668338 I33 -L49 0.0213882978653031 L19 -A24 0.0210054780105811 P36 -I44 0.0185946242885793 L30 -G38 0.0184946129864758 I44 -F52 0.0182302995584051 A45 -F52 0.0180096495252533 L26 -L31 0.0166568402573626 R43 -W50 0.0135624642714722 I35 -P51 0.013561035237061 F37 -A45 0.0121800217148982 P36 -A45 0.00777211718910009 I35 -A48 0.00616719794773113 A24 -I32 0.00356049402954106 T34 -L49 0.00324149408045482 F37 -A48 -0.000813190240819273 S25 -I32 -0.00239264159591013 I33 -L42 -0.00390923952853051 A40 -L49 -0.00505413237614627 I32 -A40 -0.00966132149170607 S25 -T34 -0.0144902441351422 F37 -P51 -0.0147905980948284 I33 -A41 -0.0152234440303585 I32 -A48 -0.0168296133087459 T34 -Y47 -0.020719235191105 F29 -F37 -0.0239018720447826 I35 -I44 -0.0289464189562301 T34 -I44 -0.0308727674743072 A41 -F52 -0.031030966676814 I35 -S46 -0.0370766290900679 G38 -F52 -0.0401111054303334 I33 -Y47 -0.0418195803374846 G38 -Y47 -0.0424722541803533 T34 -R43 -0.043291323386948 L26 -I33 -0.0505780667618895 T34 -W50 -0.0525221388340652 I33 -A48 -0.0526913785151679 F29 -P36 -0.0529704049664896 I44 -P51 -0.0537043271342252 L23 -F29 -0.0565955270350358 Y47 -F52 -0.0581508964993054 F39 -A45 -0.0615547053319363 V27 -P36 -0.0617009613045267 L31 -A40 -0.0636880038726773 L19 -V27 -0.0654537508495734 P36 -F52 -0.0685246171377623 F37 -G53 -0.0750836455333102 F39 -F52 -0.0751297310420593 F29 -I35 -0.0764652644510146 C28 -P36 -0.0772978576278378 I32 -P51 -0.0792579090219743 I32 -Y47 -0.0835113882455338 L22 -F29 -0.085524710479274 L42 -W50 -0.0887060210671002 P36 -G53 -0.0896987771682338 P36 -Y47 -0.0910521435454394 I33 -F52 -0.0976330080156425 L22 -C28 -0.0976965689980247 T34 -A41 -0.0979380324656769 G38 -A48 -0.0983950783979355 Y47 -G53 -0.102028514721686 L23 -L31 -0.10325198861818 Y21 -F29 -0.104955045232448 I44 -G53 -0.105824497157399 F37 -F52 -0.107405336937024 L30 -F39 -0.108115996974111 V27 -T34 -0.111310270293659 L19 -L26 -0.113351927975916 S25 -I33 -0.113802024264838 T34 -A40 -0.11380341410507 A45 -P51 -0.114387712646721 I32 -A41 -0.120819727005272 F37 -L49 -0.123422944861234 F39 -P51 -0.127327533538435 F29 -G38 -0.130156099877311 T34 -F39 -0.131109668202169 I33 -W50 -0.133791379563521 T34 -L42 -0.139826356191401 R43 -F52 -0.144158058427971 G20 -S25 -0.152938554928493 A24 -F29 -0.153903613370422 L31 -G38 -0.161251851362063 A18 -S25 -0.161940265710789 G20 -V27 -0.162618878508778 L30 -F37 -0.163420153989956 I32 -F39 -0.164746449576141 I35 -W50 -0.170282694380247 A41 -A48 -0.17217338595958 G20 -C28 -0.173488787862439 F37 -Y47 -0.174433673450203 A40 -F52 -0.18201176099297 S25 -L30 -0.185180696879659 A18 -L23 -0.187199581179431 F37 -R43 -0.187401153066515 I35 -Y47 -0.19844560887259 V27 -I32 -0.200155557841606 A41 -S46 -0.202464571802576 A18 -A24 -0.202857313022469 I33 -G38 -0.206685825058956 Y21 -C28 -0.209832922432364 F39 -S46 -0.226144172803754 L19 -S25 -0.237492290082715 F37 -I44 -0.240895765708248 I33 -A40 -0.250198557029691 C28 -I35 -0.26029457838735 F39 -L49 -0.261653517502593 I33 -F39 -0.266128007750217 L42 -A48 -0.266461084276591 C28 -T34 -0.267882430442908 F37 -L42 -0.268468973011457 G38 -I44 -0.269691546024312 L31 -P36 -0.269844361637005 I32 -G38 -0.273641966503532 F29 -T34 -0.273863432070059 S25 -L31 -0.274208588567761 G20 -L26 -0.276279355215634 A41 -Y47 -0.280604591758655 L30 -I35 -0.282187581897935 P36 -R43 -0.306406173129674 Y21 -V27 -0.306716269551914 I35 -L42 -0.309748379067692 P36 -A48 -0.311743857990034 V27 -I33 -0.31774500422021 I35 -A41 -0.341421987324079 L26 -I32 -0.365400156472742 P36 -L42 -0.387257597878057 F37 -W50 -0.396939793189493 A40 -A45 -0.402059513025173 L22 -V27 -0.402890884251278 A41 -P51 -0.415667087006433 P36 -A41 -0.421173679154597 C28 -I33 -0.432429476044161 F39 -W50 -0.433119364243101 A40 -A48 -0.463086607886043 I35 -A40 -0.466501319128633 L23 -C28 -0.529143021083863 A40 -S46 -0.548208233915982 L30 -P36 -0.560461293614664 P36 -P51 -0.598363173249406