[Mon Aug 29 18:01:17 2016] >Input file: TMA0A0H3M435M1G.pdb >TM segments: 29-49_ 57-71 MAIDEN score = 1.2030 Below is the ranking list of the residue pairs and their related pseudo-energy (the lower, the better). This includes inter-chain residue pairs. The maximum (least favorable) pairwise energy value has been set to 10. See the MAIDEN software article: Postic,G., Ghouzam,Y. and Gelly,J.C. (2015) Biochimie, 115, 155–161. ----------- ---------------- Calpha pair Empirical energy ----------- ---------------- D37 -G46 10 V38 -V60 1.22139769299961 I39 -S49 0.97384973302762 D40 -V48 0.951619300600981 D40 -A47 0.854327296925463 V48 -L57 0.837805421939681 V38 -V61 0.793684028524436 I39 -V48 0.787025003332898 T36 -V41 0.709370344461428 V38 -A64 0.639491319676505 V38 -L57 0.595282902008329 F30 -A68 0.560109082192247 A34 -V61 0.516232504739964 Y31 -A68 0.492929542155893 I39 -L57 0.469320613320505 Y31 -A64 0.448215122106711 V38 -V48 0.429487202088173 L32 -D37 0.428657792226584 V38 -A47 0.420851464696616 A34 -V60 0.38588022018835 A34 -A47 0.352544139863357 V41 -V48 0.348334455339912 A34 -S63 0.346182738952884 V48 -V60 0.341980339843333 D37 -L57 0.340239316427013 D37 -V62 0.333635595652642 A35 -G67 0.32956359508214 S49 -L57 0.318597077670335 Y31 -G46 0.310804727386621 D37 -V61 0.309280180858865 A35 -A68 0.298836461258349 V41 -G46 0.298792211756151 M29 -D40 0.288622166775364 A43 -S49 0.26434327650757 Y31 -D40 0.260726149278115 V38 -S49 0.22901291447951 A34 -Y59 0.226906483494425 A35 -A64 0.225863821888356 S49 -S63 0.224637707155969 G46 -V61 0.216196942924463 V38 -V62 0.211792118909041 A47 -Y59 0.204639563010685 Y31 -S63 0.202761624656017 R45 -V60 0.192080794575573 A35 -G46 0.192031184627032 D40 -V60 0.187730097060685 G46 -T58 0.186878507495976 D37 -A43 0.184383951105499 T36 -L57 0.182735597403758 A35 -A42 0.170526563350977 V33 -V71 0.164668293542363 I39 -A64 0.16271399617466 V48 -V61 0.159346328288684 L32 -S63 0.155187715852229 D40 -V61 0.144541350936081 T36 -T58 0.143989489845601 Y31 -V62 0.142931261063652 V38 -S63 0.142633126385089 I39 -G46 0.131160413211963 V44 -S49 0.13092061843344 D37 -A64 0.115177304151978 D37 -A42 0.114711183769367 L32 -A68 0.105658335711434 A42 -A47 0.10209199184324 V38 -A43 0.101722276417807 V33 -L66 0.101120176586334 V41 -L57 0.100990771653036 L32 -V71 0.10097926780769 L32 -D40 0.0993122648586597 V38 -Y59 0.0974693201250894 A35 -V62 0.0921638014310627 Y31 -T36 0.0869420419781424 F30 -D37 0.0866024269692742 V48 -S63 0.0865647836378747 V33 -A43 0.0859752537255423 T36 -A43 0.0811364470014362 S63 -V71 0.0810606722763816 M29 -S63 0.0804823574475444 L32 -L66 0.0803132957637089 A35 -L66 0.0790662396686557 A35 -V61 0.0785583894051456 F30 -D40 0.0767753596317302 T36 -R45 0.0763273867186539 V38 -L66 0.0751260797674599 A35 -L69 0.0728173207592953 V33 -V62 0.0716775917505164 I39 -R45 0.0715924280416935 L32 -R45 0.0715210713398647 A34 -A42 0.065956806400215 V38 -T58 0.0650803222052025 I39 -A47 0.0643674592298744 V41 -T58 0.0622050486107462 A34 -L57 0.0610437150617189 A42 -V60 0.0608112778076109 V48 -A64 0.0586482976314944 Y31 -L69 0.0551757150202641 Y31 -V61 0.0532410673775043 V38 -R45 0.0476825403609773 L32 -G67 0.0470789198167352 G46 -S63 0.0425531345913466 G46 -A64 0.0373867349446222 L32 -A42 0.0350257037603052 V38 -G67 0.0348036138884984 V33 -A68 0.0342727336263446 T58 -A68 0.0330934638075392 M29 -F70 0.0290417574010182 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-0.104652068575163 L32 -S49 -0.104742467067325 S49 -A64 -0.105006136671307 L32 -V44 -0.105457393370613 T36 -V60 -0.107058773098007 D37 -G67 -0.10838719211168 V33 -V44 -0.108941869299969 V61 -L69 -0.109565192134458 V33 -V41 -0.110099933386878 V60 -L69 -0.110739529250662 L32 -V48 -0.11086711872002 R45 -S63 -0.110944213335045 D37 -T58 -0.111002758241327 V60 -G67 -0.111869579177812 Y59 -A68 -0.112566767301959 V61 -F70 -0.117309771284692 L32 -V65 -0.118189862646107 A35 -T58 -0.118977541751411 L32 -G46 -0.120385048879516 D37 -L66 -0.120678374000532 A42 -S49 -0.124874848632103 D37 -R45 -0.125864156579397 D37 -V65 -0.126877261608863 M29 -D37 -0.127430990784976 A34 -T58 -0.129737536515713 M29 -V71 -0.129971982439946 V33 -F70 -0.129995289324295 L32 -V61 -0.132711756486705 V33 -G67 -0.133021034368574 V33 -D40 -0.133211629690136 M29 -V38 -0.136405620058265 T58 -L66 -0.136495240260734 D40 -T58 -0.138606452908376 Y31 -G67 -0.142734649611868 L57 -L66 -0.144339520180515 F30 -R45 -0.1444938808767 M29 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