[Fri Aug 26 16:32:27 2016] >Input file: TMA0A0H3MCE4M1D.pdb >TM segments: 46-61_ 73-89 MAIDEN score = -14.0587 Below is the ranking list of the residue pairs and their related pseudo-energy (the lower, the better). This includes inter-chain residue pairs. The maximum (least favorable) pairwise energy value has been set to 10. See the MAIDEN software article: Postic,G., Ghouzam,Y. and Gelly,J.C. (2015) Biochimie, 115, 155–161. ----------- ---------------- Calpha pair Empirical energy ----------- ---------------- A56 -D80 0.76063966927462 V60 -L77 0.62138462389507 A52 -M88 0.621200618406893 V60 -D80 0.573397921831425 A59 -D80 0.550819949613912 A56 -V84 0.52575199776863 L49 -M88 0.513848269424157 G48 -A56 0.277074020556966 A52 -S86 0.276199218982802 L75 -D80 0.251580325734714 A56 -F79 0.229021543069417 G74 -D80 0.226846962136524 M55 -R85 0.223189652775101 F53 -T81 0.182422706262907 L82 -T89 0.172111503485283 L78 -S86 0.171293517405545 A52 -F87 0.170846266857016 G76 -V83 0.168314735659805 T54 -T81 0.165908335391989 S61 -F79 0.151086794025106 A47 -M88 0.144054509162219 M55 -S86 0.142341534849035 S57 -F79 0.128896008378033 S46 -A56 0.124891682016846 S46 -T89 0.124533578165861 S61 -G76 0.115245970782896 A56 -L82 0.108313748642895 A56 -G76 0.106105857706749 T54 -V83 0.102995251821876 S46 -M55 0.0977096249462961 A52 -D80 0.0929411879688633 F51 -F87 0.0904122196251724 M58 -T81 0.0899766018323757 G48 -R85 0.084874794739538 F53 -L77 0.0833193741131204 L49 -T89 0.0815130793120904 L49 -S86 0.0810860668141968 V60 -I73 0.0803230632264409 S61 -G74 0.0801588202555958 A47 -T89 0.0777331574237672 G48 -S57 0.0743821334543762 F51 -A59 0.0712018717978617 T54 -V84 0.0684995208041259 S46 -F87 0.0679166735920189 M55 -V83 0.064904250775629 S57 -V83 0.0628745700725899 M55 -T81 0.0624112695731088 A47 -F87 0.0606758042177726 G74 -L82 0.0604939748527814 M58 -L78 0.0596309747494865 T54 -M88 0.0543947763043907 T54 -F87 0.0533791839939841 A52 -T89 0.0531230877641233 V50 -R85 0.0527707287452566 A59 -L82 0.0520347556672269 L49 -A59 0.0510031062388308 G48 -T89 0.0508678296529479 F79 -M88 0.0490274278341882 M55 -F79 0.0472549245828255 I73 -L78 0.0469854617030236 M58 -V83 0.0443685789821036 V60 -R85 0.0430641765005491 T54 -R85 0.0382082772457979 A59 -G76 0.0360594737945963 G48 -S86 0.0335669114285688 S46 -T54 0.0330128615754637 S61 -T81 0.0327993772538626 M55 -D80 0.0323667704993098 S57 -G76 0.0321035580234525 D80 -T89 0.0303820960702705 G48 -M58 0.029928525365599 L49 -S57 0.0279178233758736 F53 -L82 0.0262821487466685 G74 -T81 0.0248662345568522 A56 -T89 0.0240416613750141 A56 -S86 0.0186586705815666 A59 -F87 0.0168692250747844 I73 -D80 0.016160474820051 F53 -M88 0.0144942597989486 A52 -L82 0.0130440134284191 A52 -V84 0.0114463677141536 S61 -D80 0.0108654250321347 F53 -S86 0.010784853318035 A52 -V83 0.0106874048297109 S61 -L78 0.00853461800546107 A59 -V83 0.00853289111985378 S57 -L77 0.00836083214432737 F53 -S61 0.00745536785199996 A47 -M55 0.00598471113194776 F53 -V83 0.00570923660472578 M58 -F79 0.0035219082101281 L49 -M58 0.00242114565728713 A52 -V60 0.00144790769882741 L82 -F87 0.00037644795410241 L77 -S86 -0.000838454823221486 G76 -V84 -0.00567221297018694 M55 -F87 -0.0088932600130579 A59 -M88 -0.00972588181158685 M58 -G76 -0.0174940952417248 V50 -A59 -0.0180084729257319 F51 -S86 -0.018048374298316 V50 -S86 -0.0198272633052272 V50 -M58 -0.0201168929145625 S57 -F87 -0.0281301833084724 D80 -S86 -0.0284470151699196 S57 -D80 -0.0307392407484569 S57 -L78 -0.032555902128987 I73 -T81 -0.0376528326211343 M58 -V84 -0.0401573757689215 A59 -F79 -0.0404625718466551 A47 -T54 -0.0413806029348915 S57 -M88 -0.042172420136561 S57 -R85 -0.0440751200069958 M55 -M88 -0.0470327850379403 L75 -V84 -0.0474370448075208 F51 -T89 -0.0483870260756349 A59 -R85 -0.0491412937221085 V50 -T89 -0.0496809619943948 M58 -D80 -0.0506925383422097 L49 -T81 -0.051789028945894 G48 -V84 -0.0521211046790588 A47 -A56 -0.0554200494901669 F53 -T89 -0.0563875111296346 S57 -L82 -0.0610243499262308 S46 -F53 -0.0664019729310899 A56 -F87 -0.0673894670640205 T54 -D80 -0.068922675075914 L49 -F87 -0.0699663802871848 G76 -R85 -0.0725567474893625 F51 -R85 -0.074060197284368 S61 -I73 -0.0745365190039342 A52 -S61 -0.078602909251547 M55 -L82 -0.0792891235090005 F53 -D80 -0.0823366585489673 G74 -V83 -0.0855214334249887 A59 -L78 -0.0861072216999821 M55 -L77 -0.0899534506806734 F79 -S86 -0.0901995252594037 I73 -L82 -0.0931907713791338 F51 -S57 -0.0939270289884787 V50 -V84 -0.0957000059762354 F51 -V84 -0.0970346721747077 L49 -V83 -0.10326834758315 A56 -L78 -0.106629270776677 V50 -F87 -0.10837513376989 V60 -V83 -0.110061938418905 S61 -V84 -0.110503340680312 G76 -L82 -0.110770600714767 M58 -L77 -0.115920674927297 T81 -T89 -0.11790982809794 L78 -F87 -0.124125657188328 V60 -L75 -0.126944466009445 A52 -T81 -0.130857057457931 V84 -T89 -0.132439130457343 F51 -V60 -0.134516398936268 A59 -T81 -0.136421524838785 L78 -V84 -0.136727976384151 F79 -F87 -0.138783569752206 F53 -V60 -0.139894540028171 V60 -F87 -0.140995163192305 L49 -M55 -0.141164492232225 F79 -V84 -0.148666437985977 A59 -L75 -0.148961311237383 L77 -R85 -0.150135219466644 A59 -I73 -0.153275852584515 G48 -F87 -0.155004653964032 V60 -G74 -0.156480403522994 V83 -M88 -0.157437670570463 L49 -R85 -0.157646798732586 F53 -M58 -0.158669234268621 S61 -L75 -0.168138283307991 D80 -M88 -0.170917459866777 T81 -S86 -0.173195847692172 D80 -R85 -0.173557657968805 A56 -L77 -0.174833663658708 V60 -T81 -0.175678340336561 L49 -A56 -0.178545553273477 G48 -M55 -0.188455092242965 F53 -F87 -0.18847737205458 S46 -M88 -0.188838653239846 A56 -R85 -0.189528763178588 I73 -F79 -0.191589651837567 M55 -S61 -0.19249401124969 L78 -R85 -0.200429591490281 G48 -F53 -0.202170885247836 A52 -R85 -0.204610943332038 M55 -V60 -0.205040148679033 V50 -M88 -0.209935136009435 A56 -S61 -0.213446649660625 V50 -M55 -0.214036771070533 T54 -V60 -0.215358354986779 L75 -T81 -0.216656636533802 T54 -S61 -0.217896074536955 S46 -A52 -0.218563702833413 S57 -T81 -0.221672379421404 L75 -V83 -0.222077507597601 M55 -V84 -0.222297300942823 G48 -T54 -0.224308695351923 V60 -L82 -0.228750587248475 V60 -G76 -0.231623907577387 F79 -R85 -0.235665956898757 F53 -R85 -0.236877456579392 L77 -V84 -0.242675979535403 A52 -A59 -0.243714731432606 A52 -M58 -0.246677640238035 G76 -T81 -0.247418340885384 A56 -T81 -0.248236850929814 S57 -V84 -0.25060026100144 A47 -F53 -0.250682746515516 L77 -L82 -0.251548214775582 A59 -L77 -0.257429666728333 G74 -F79 -0.265802866693297 A56 -M88 -0.266290427197629 V83 -T89 -0.269854126793963 F51 -M58 -0.270066162017283 D80 -F87 -0.270491292472341 L77 -V83 -0.272899619891249 F53 -A59 -0.281642470138442 S46 -F51 -0.288974377826319 V50 -A56 -0.293511905352002 F51 -M88 -0.295704327904681 L49 -V84 -0.296050302907428 T81 -F87 -0.305003631920723 L82 -M88 -0.305409278874313 T81 -M88 -0.306109536105002 L49 -T54 -0.313704255280828 A59 -V84 -0.322029076900618 G48 -M88 -0.322329017228654 S61 -L77 -0.326989062573368 L75 -L82 -0.329454420086956 F53 -V84 -0.331044761968928 V50 -S57 -0.336514497144805 V60 -F79 -0.342230825683702 V60 -V84 -0.346122302742202 A56 -V83 -0.358126350860799 T54 -A59 -0.359079770569924 A47 -A52 -0.36325442474214 V60 -L78 -0.405805720892471 F51 -A56 -0.425883391952337 L78 -V83 -0.43994235443163 A52 -S57 -0.440469506119904