[Mon Aug 29 17:00:16 2016] >Input file: TMA0A0H3P341S1G.pdb >TM segments: B245-256 MAIDEN score = -0.1712 Below is the ranking list of the residue pairs and their related pseudo-energy (the lower, the better). This includes inter-chain residue pairs. The maximum (least favorable) pairwise energy value has been set to 10. See the MAIDEN software article: Postic,G., Ghouzam,Y. and Gelly,J.C. (2015) Biochimie, 115, 155–161. ----------- ---------------- Calpha pair Empirical energy ----------- ---------------- A247B-T253B 0.146663901196211 V245B-A252B 0.104283242436039 L246B-A252B 0.0868292603198446 V245B-H251B 0.0581291940968942 V245B-H250B 0.0313951951835323 S248B-T253B -0.0291874277068054 L246B-H251B -0.176693096137994 A247B-A252B -0.18044893794487 H250B-V255B -0.21219616993613