[Mon Aug 29 17:00:56 2016] >Input file: TMA0A0H3P341S5G.pdb >TM segments: D335-343_D347-367_D411-439 MAIDEN score = -6.5638 Below is the ranking list of the residue pairs and their related pseudo-energy (the lower, the better). This includes inter-chain residue pairs. The maximum (least favorable) pairwise energy value has been set to 10. See the MAIDEN software article: Postic,G., Ghouzam,Y. and Gelly,J.C. (2015) Biochimie, 115, 155–161. ----------- ---------------- Calpha pair Empirical energy ----------- ---------------- E418D-D429D 0.669136671906918 L335D-L361D 0.622373201548201 V434D-E439D 0.564680502641259 I351D-K358D 0.468837629679055 A417D-V434D 0.408206400807708 L335D-T360D 0.394787818882214 E418D-T425D 0.389205967818377 L421D-T426D 0.382262244340899 D428D-R436D 0.337460122241608 G352D-K358D 0.323717798430615 Q432D-E439D 0.321038296039623 Y415D-V433D 0.319695944215026 A342D-L347D 0.295299688529389 E418D-Q432D 0.283970958461416 V350D-K358D 0.283056945825754 M414D-R436D 0.281143786971639 L335D-A356D 0.279278497681839 P422D-K427D 0.278836481395896 E418D-T431D 0.273339720751818 M414D-D428D 0.273246563047653 H411D-A416D 0.268487108686434 E418D-P423D 0.267184471880584 E418D-V433D 0.259985164443458 Y415D-R420D 0.254409989815725 L421D-K427D 0.249881114388652 Y415D-D429D 0.247632993362929 T425D-Q432D 0.246710766420501 A342D-T348D 0.244493052813965 T341D-L347D 0.241963180390945 K427D-Q432D 0.241211899307485 D428D-V434D 0.239845632413255 S339D-K358D 0.235208918720978 V433D-L438D 0.221456136845029 D429D-A435D 0.215901194348286 G352D-L361D 0.205475551445012 L335D-K358D 0.204272384818986 I338D-G357D 0.202208621328489 A342D-A362D 0.200874216490158 L335D-G357D 0.195063610248057 G337D-T360D 0.189309363855015 S339D-A362D 0.18862854778402 G337D-G357D 0.185301895731197 A356D-A362D 0.185096621883114 L421D-D428D 0.184575071699002 G355D-L361D 0.179839460099982 L335D-G352D 0.179091740429283 L419D-T425D 0.179037611036554 A417D-T426D 0.178334110119224 G352D-T360D 0.177966540900347 I351D-A362D 0.176542267036159 A349D-V365D 0.16724259750953 Y415D-V437D 0.16291752475037 T425D-T431D 0.162863225295555 A417D-R436D 0.162700219750538 A416D-V437D 0.148902934808937 L340D-V365D 0.145974910436903 R420D-A435D 0.144896852014365 D336D-R363D 0.143038219138996 K427D-A435D 0.142553233954889 T348D-K358D 0.141025811750906 P422D-R430D 0.137778623294935 A417D-E439D 0.137074818779884 L340D-I351D 0.133399941897864 S339D-V350D 0.130116568899163 L421D-V437D 0.127455786994522 G357D-R363D 0.124105511151979 V350D-S359D 0.119987103457395 Y415D-A435D 0.119733898188123 P353D-T360D 0.118976778085448 L335D-L340D 0.116929979685525 R343D-A349D 0.114782158739202 R420D-T425D 0.114589775167239 V350D-G355D 0.11379965849014 L419D-L438D 0.113300853037143 G352D-A362D 0.105731976580039 T341D-V350D 0.104889378623852 S339D-L364D 0.104103235020692 L340D-L347D 0.100554529816808 P422D-Q432D 0.0994783270108233 A342D-A366D 0.0994410307558944 E418D-R436D 0.0967882327431924 G337D-A356D 0.095390131075378 A342D-L361D 0.0952807175416812 L413D-A435D 0.0940879285151107 G337D-V365D 0.0927730188515752 L413D-L421D 0.0882155467997903 L413D-V434D 0.0856327702209039 D424D-T431D 0.0854572173975816 S339D-T360D 0.0846380867385575 A349D-L364D 0.0842309718477763 S339D-T348D 0.0813960235614413 M414D-P422D 0.0813300180125347 S339D-A349D 0.0813085537853633 L421D-R436D 0.0809787119764038 R420D-K427D 0.0809752021605865 L335D-V350D 0.0790554782839079 A417D-P423D 0.0774458647733445 L419D-V437D 0.0771361592772901 T425D-R430D 0.0767130321297002 D429D-R436D 0.0766435535006611 L361D-A366D 0.0755027244941644 S354D-L361D 0.0732886130204307 M414D-L421D 0.0726822807946519 L419D-K427D 0.0720561045272565 P422D-D428D 0.0715536420124404 L340D-L364D 0.0715360412410551 P423D-D428D 0.07141786606724 T341D-T348D 0.0707780000221909 T426D-V434D 0.0685147649282666 L421D-L438D 0.0663669595781093 E418D-E439D 0.0660355441070205 V350D-L364D 0.0651762123370307 A416D-L438D 0.0651515679606298 A412D-R420D 0.0635526300349172 K427D-V433D 0.0635426025778467 D424D-V433D 0.0634837159338684 D424D-R430D 0.0633194729973727 T341D-L364D 0.0627763111536774 L335D-I351D 0.0605505238269899 R420D-Q432D 0.0595184946011553 L335D-S354D 0.0581508037690153 P423D-Q432D 0.0573068541516344 L340D-A362D 0.0548702495319136 R343D-V365D 0.0548368728111792 A412D-L421D 0.0542725988242267 A342D-I351D 0.0535766797028234 Y415D-T426D 0.0532093723089528 V350D-R363D 0.0527725579812599 R430D-E439D 0.051268410764354 G337D-A362D 0.0509125483358903 A416D-P423D 0.0504573497257086 S339D-G357D 0.0501153520111774 V350D-T360D 0.0482873029157567 P353D-A362D 0.0470778425154368 T431D-V437D 0.0459993459577168 D424D-D429D 0.0459348759671967 A349D-L361D 0.0453022976291546 A412D-L438D 0.0442142967454835 A416D-A435D 0.0433442413149221 L340D-A349D 0.0412930888007996 L340D-A366D 0.0408008600857048 A342D-L364D 0.0399392028503476 D336D-S359D 0.0391543919434896 L413D-V437D 0.0386308266555249 A356D-L364D 0.0371926557980586 I338D-A362D 0.0368673995263529 L340D-K358D 0.0365409358847506 A417D-L438D 0.0342812794420304 T431D-E439D 0.0338478765973784 A342D-V350D 0.032284769419459 S359D-G367D 0.0320755845770633 T425D-V433D 0.0317571182627899 P423D-V433D 0.0314376794168287 T348D-A362D 0.0300692325691223 R430D-R436D 0.0289886865129567 I338D-A349D 0.0283003753917823 A349D-S359D 0.0266336219889283 A417D-T425D 0.0256564178005168 A416D-T426D 0.0254215176791059 A417D-D428D 0.0229017988974318 A342D-G367D 0.0228242289042462 T360D-G367D 0.0213113840022814 M414D-T431D 0.0198446739469071 K427D-V434D 0.0185097535204322 L413D-R420D 0.0181396693640306 L347D-V365D 0.0153693899345324 L335D-L364D 0.0152943745733864 D336D-L364D 0.0125051362046378 K427D-V437D 0.0115867656029209 G337D-L364D 0.0113918076554813 S354D-A362D 0.0109942651186454 G355D-A362D 0.00896898818501635 L413D-E439D 0.00864977489763152 T341D-A349D 0.00582457560620675 S354D-T360D 0.00497858439007892 I338D-A356D 0.00346312064427984 I351D-T360D 0.00248044461915242 I338D-S359D 0.00118089432829471 L340D-G357D 0.000428998447270401 P422D-V434D 0.00012575130055259 A417D-V437D -0.0035015625622874 G352D-S359D -0.00421603450862307 G337D-K358D -0.0073006914413114 Q432D-L438D -0.00737752655872276 S354D-S359D -0.00755586408978548 R420D-L438D -0.00771966748846875 T341D-A366D -0.00773725000344516 R420D-D428D -0.00807745908399005 I338D-R363D -0.00881885769123814 P353D-S359D -0.010065984952309 R420D-T431D -0.010730664802121 G357D-V365D -0.0108786097622984 D336D-A362D -0.0110173703217544 D429D-L438D -0.0129473724037728 D336D-G357D -0.0149897586691399 T431D-L438D -0.0151041984798548 T341D-R363D -0.0156875201538162 A417D-D424D -0.0174327062775363 T348D-S359D -0.0194622013343682 D336D-G352D -0.0213993328632556 A416D-V433D -0.022475134336206 L413D-V433D -0.024208663893706 V350D-A366D -0.0251032611608619 T426D-A435D -0.0270915868400656 P422D-V433D -0.0271940661355892 L340D-G367D -0.0277092240087233 A412D-V434D -0.02909231679145 A356D-L361D -0.0315413310454897 I351D-V365D -0.0319881414021204 E418D-L438D -0.032517612871052 T341D-G367D -0.0336689456470145 M414D-D429D -0.0360224325147112 A417D-T431D -0.0368032326247296 A356D-R363D -0.0380477254369369 A349D-G357D -0.0386559084576605 T348D-A366D -0.0391491744252429 I338D-I351D -0.0402547655058685 K358D-A366D -0.040353093438518 Q432D-V437D -0.0404944580037901 M414D-L419D -0.0410396485659064 R420D-R436D -0.0410906911646503 H411D-A417D -0.0416005938672601 S339D-G367D -0.0417315455829879 R420D-V434D -0.0417431499578642 D336D-V365D -0.0419747541373674 A349D-T360D -0.0428121851013404 L421D-D429D -0.0433587664569384 A349D-A356D -0.0435893330784611 T348D-V365D -0.0441127793953271 L335D-G367D -0.0445050469294888 T341D-L361D -0.0451571373349822 A417D-Q432D -0.0457895309116525 G357D-A366D -0.0467869120651576 P353D-L361D -0.0476836072196227 E418D-R430D -0.0491415453746918 H411D-E418D -0.0503753584315441 L413D-E418D -0.0509639354156173 I351D-R363D -0.0511020556579131 L413D-R436D -0.0519780876608325 A349D-A366D -0.0563060518000671 M414D-T426D -0.057598464125709 R420D-V437D -0.05865298994566 T348D-L361D -0.0597441319876966 G355D-R363D -0.0600355898219682 R343D-A366D -0.0601640813312141 A416D-V434D -0.0604707353339791 I338D-G367D -0.0605106042201879 A417D-R430D -0.0629274519669565 R420D-T426D -0.0646350803642139 D424D-Q432D -0.0660951547276031 M414D-V433D -0.0678008806869616 L419D-R430D -0.0688728553501265 V350D-V365D -0.0711277354766136 S339D-R363D -0.0726260861375172 D336D-K358D -0.073095808263639 L419D-Q432D -0.0732559655190128 M414D-V437D -0.0742261079371263 P423D-V434D -0.0742869077838573 L419D-D428D -0.0744399232034965 M414D-R430D -0.0747529845384829 L419D-A435D -0.075520064311478 P423D-R430D -0.0759220485400283 T341D-V365D -0.076888826640328 S339D-A366D -0.0789608364343 E418D-V434D -0.0814908135299169 L421D-A435D -0.0817932971724109 A416D-D429D -0.0827828340490956 M414D-V434D -0.0849585353271127 Y415D-P422D -0.0854373084098642 L335D-P353D -0.0870876166691659 L340D-T360D -0.0880776703163226 K358D-L364D -0.0884889968343145 D424D-V434D -0.0904948742398677 E418D-D428D -0.0906331208957074 M414D-Q432D -0.0909633150009383 K358D-G367D -0.0916960459044192 A416D-R430D -0.0925326348675735 R420D-R430D -0.0928932921620839 T360D-A366D -0.0932837577399759 D429D-V437D -0.0934969160859014 T341D-A362D -0.0938795841864466 M414D-E439D -0.0949746853585296 I338D-G352D -0.0957702853474993 E418D-D424D -0.0974431919943891 Y415D-L438D -0.103956823913719 A416D-P422D -0.106584362479506 A349D-K358D -0.106680714757792 L347D-A362D -0.108617403148378 D428D-L438D -0.112043046481288 D336D-G355D -0.114401401631057 L421D-R430D -0.114670834864697 D336D-A356D -0.119204585088121 Y415D-L421D -0.120061818219948 E418D-T426D -0.12036742465722 L340D-R363D -0.120762150586025 G337D-L361D -0.122436333451822 A342D-R363D -0.124561820788786 D428D-V437D -0.127114499952984 G357D-L364D -0.129899741781083 T426D-Q432D -0.129945788533109 T425D-V434D -0.130268126340679 I338D-K358D -0.131013791205469 L421D-T431D -0.131599431824824 T426D-T431D -0.132086880721348 L335D-R363D -0.13254633511096 I338D-A366D -0.133160878522477 V350D-G357D -0.136542774996444 I338D-T360D -0.136903667210237 K358D-R363D -0.137690022191366 A412D-E418D -0.13783298223481 T360D-V365D -0.138227824504769 A417D-P422D -0.139707104402338 K427D-R436D -0.14148051268163 I351D-L361D -0.141790250219481 D336D-T360D -0.142083279203665 Y415D-R430D -0.143166255169067 D429D-E439D -0.148431015839008 R420D-D429D -0.152164779852158 L340D-V350D -0.153858046553989 L335D-V365D -0.15623347959889 R430D-V437D -0.158683191937399 G355D-T360D -0.15901144883393 I338D-V350D -0.15926423158891 L335D-A366D -0.163232877517996 L413D-R430D -0.163426675228452 A417D-K427D -0.163763008908881 A349D-R363D -0.164459250362738 R420D-V433D -0.165941058353569 I338D-L361D -0.166258120010006 L419D-V434D -0.166930799133251 L421D-V433D -0.1676466120946 L335D-G355D -0.177311562992452 L413D-D429D -0.1776859160181 L419D-V433D -0.179704232169019 V433D-E439D -0.180139937439264 V350D-A362D -0.180507388262111 D428D-A435D -0.186753532414308 L340D-L361D -0.187285777016775 S339D-L361D -0.187605742963617 S359D-A366D -0.193258430149949 A349D-A362D -0.196348286014238 A417D-A435D -0.196554157421031 H411D-L419D -0.198660531446157 I338D-V365D -0.199689357965442 R343D-T348D -0.202287858714196 H411D-R420D -0.203247055291131 T431D-R436D -0.205180756504019 L335D-A362D -0.205333229984705 A417D-D429D -0.206832427086761 R430D-L438D -0.207967503636605 M414D-L438D -0.210081913064561 K358D-V365D -0.210961308235793 E418D-K427D -0.220574774851561 E418D-A435D -0.220816914784795 A342D-V365D -0.223052407863403 M414D-R420D -0.226071383981923 V350D-A356D -0.226127869997138 L419D-D429D -0.230254376725824 L421D-Q432D -0.232122095549683 M414D-A435D -0.234377845044046 P422D-D429D -0.237735925907224 A416D-L421D -0.245732494873099 A342D-A349D -0.24818907852063 D336D-L361D -0.249502050918696 S339D-V365D -0.25056847513655 I351D-S359D -0.257783158747189 P423D-D429D -0.258288634495686 A412D-L419D -0.258423203764426 T426D-V433D -0.263012141474838 I351D-G357D -0.275056948414188 L413D-L419D -0.278632315677836 R343D-V350D -0.282886067699357 L335D-S359D -0.283667742987295 L419D-T426D -0.286393301292056 L340D-T348D -0.286460538725719 E418D-V437D -0.292022384918283 S359D-L364D -0.300632604949309 P353D-K358D -0.305630579302191 L419D-D424D -0.306944805213934 L361D-G367D -0.319902229698884 Y415D-V434D -0.331627775355494 I338D-L364D -0.343407210280483 S359D-V365D -0.347161248062751 R430D-A435D -0.3509681766871 A417D-V433D -0.366069537944152 I351D-A356D -0.368541919685362 A362D-G367D -0.3907215832738 A412D-A417D -0.398740899425543 V350D-L361D -0.407538025040782 G352D-G357D -0.411536231276071 L413D-L438D -0.419072238340329 G357D-A362D -0.429049517696531 D429D-V434D -0.437263872836157 L421D-V434D -0.441224296834241 D428D-V433D -0.667929403141104