[Fri Aug 26 17:09:44 2016] >Input file: TMA0A0H3P8M8M1D.pdb >TM segments: 35-82 MAIDEN score = -11.7444 Below is the ranking list of the residue pairs and their related pseudo-energy (the lower, the better). This includes inter-chain residue pairs. The maximum (least favorable) pairwise energy value has been set to 10. See the MAIDEN software article: Postic,G., Ghouzam,Y. and Gelly,J.C. (2015) Biochimie, 115, 155–161. ----------- ---------------- Calpha pair Empirical energy ----------- ---------------- F58 -L63 0.54267635724824 R50 -L55 0.364075577272114 V43 -R48 0.345138971713123 E44 -V49 0.331394453175522 H45 -R50 0.330269629997112 T54 -R59 0.322611533564081 A69 -G76 0.316529580239207 R50 -M56 0.278851992891598 P61 -Y70 0.255787795635479 A62 -Y70 0.228369802756298 Y41 -R46 0.2262315958494 Y52 -A57 0.224660274894629 P39 -T47 0.209537726951032 L65 -Y70 0.20287435062367 L55 -P61 0.189184426632813 V49 -M56 0.186660470228603 E44 -Y52 0.184176495584928 K51 -R59 0.170407842892196 A66 -G71 0.168803385592183 N75 -L80 0.16824262533954 A62 -A69 0.164840061259756 P39 -R46 0.157432452705874 A62 -A67 0.153308124760236 Y70 -N75 0.150842051589402 A36 -H45 0.149189317956999 A66 -H74 0.148591035049353 T47 -T54 0.141539308482412 H45 -Y52 0.140606778162156 A37 -E42 0.140524964049538 G71 -S79 0.131326684257201 A38 -R46 0.124642882819678 P61 -A69 0.124621156865146 V49 -L55 0.119569496848218 L65 -W73 0.116153949379971 A62 -G71 0.106644013419026 A66 -N75 0.104988712252543 A69 -L77 0.0889171608067274 V43 -K51 0.0884411549262016 R59 -A67 0.0848313360685946 I68 -I78 0.0794304861691058 S40 -R46 0.0770235621384749 A36 -V43 0.0756749012026932 L53 -P61 0.0746567712130425 R48 -L55 0.0738106028468304 L77 -I82 0.0656998342822387 P39 -H45 0.0638642832411875 A37 -R46 0.0626616751925894 H45 -K51 0.0605700308269537 I68 -G76 0.0555261781346044 R46 -T54 0.0534870093420652 S35 -E42 0.0516345353840908 R48 -T54 0.0500104325698467 V60 -A69 0.0493249560505324 L65 -A72 0.0490852546776979 P61 -A66 0.047042693457902 L53 -A62 0.0423032008862128 H45 -L53 0.0418705211929868 L55 -V60 0.0412917641730601 A67 -G76 0.0376050944274962 A57 -L65 0.0362859094474888 T54 -L63 0.0329196140680681 A37 -H45 0.0325220769862309 M56 -I64 0.0297894077055254 F58 -L65 0.0295958065864643 R50 -F58 0.029328560414883 L63 -W73 0.0276089670064104 G71 -L81 0.0243609424307951 E42 -R48 0.0230511857319162 N75 -I82 0.0218732997088882 E42 -T47 0.0170661732841484 Y41 -R48 0.0165466121400661 I64 -H74 0.0148256803397122 F58 -A67 0.0145735323865686 H74 -I82 0.00998669520757017 E42 -K51 0.00773973399471606 F58 -A66 0.0038009347202248 M56 -L63 0.0030620492751563 R59 -Y70 -0.000815991378180447 E42 -R50 -0.00298000387568464 G71 -L80 -0.00407608678714499 W73 -I82 -0.00411117943360662 R59 -I64 -0.00800338940420597 E42 -V49 -0.0104087383915346 K51 -A62 -0.0107137080938431 T47 -L53 -0.0142629321915262 A38 -T47 -0.0157212564271143 S35 -E44 -0.021090580772905 E44 -R50 -0.0275085353336206 N75 -L81 -0.028536143601384 P61 -I68 -0.0287838312303794 Y70 -I78 -0.0317802521185975 S40 -T47 -0.031962602977254 L53 -V60 -0.0332273994354368 A72 -S79 -0.0349338438554359 Y41 -V49 -0.0352845206705705 K51 -A57 -0.0377594487248913 R46 -L55 -0.0399451639251653 A38 -H45 -0.0414068052660905 I64 -A72 -0.0416982634823224 A67 -L77 -0.0420657281511199 R50 -A57 -0.0422274905534348 R46 -K51 -0.0451884184164981 A57 -I64 -0.0455484324729847 A69 -N75 -0.0478282197746891 V60 -Y70 -0.0493499476288681 L55 -L63 -0.0498801159681568 S35 -Y41 -0.0590181136151253 L63 -A72 -0.0668398968413868 Y52 -V60 -0.0682590910223642 A72 -L80 -0.0685525777733123 H74 -L80 -0.0709490844535712 P61 -G71 -0.0720189125767907 A57 -A66 -0.0722749305276011 S35 -H45 -0.0733373989006183 Y52 -A62 -0.0738056119261083 E44 -L53 -0.0744018287850318 R50 -R59 -0.0752675348716246 A36 -E44 -0.0781727335510323 S40 -R50 -0.081671718249622 A67 -N75 -0.0822424281922896 S40 -R48 -0.0826858763062848 T47 -Y52 -0.0827433957044752 G71 -L77 -0.0865923073984787 S35 -V43 -0.0867324718207607 V60 -I68 -0.0901311824730104 Y70 -L80 -0.0921969196577246 I68 -L77 -0.0965248593566184 T47 -L55 -0.099032002759465 W73 -L80 -0.0995974771248811 L55 -I64 -0.0999048844868802 R46 -Y52 -0.100047519278391 S40 -V49 -0.106122521021267 W73 -L81 -0.107622659358643 T54 -P61 -0.107974954481649 P39 -R48 -0.109577559402846 Y41 -T47 -0.114156391112676 P61 -A67 -0.11529492571606 Y52 -R59 -0.121385014059812 R46 -L53 -0.122168603017425 A69 -I78 -0.124927538337933 I68 -W73 -0.125692286523727 V49 -F58 -0.127290867328669 H45 -T54 -0.130583823457359 Y70 -L77 -0.136049279896231 A38 -E44 -0.13677497452609 A37 -V43 -0.136859251331157 Y41 -R50 -0.139238258558889 R50 -A62 -0.140888051451302 P39 -E44 -0.140938780364527 M56 -P61 -0.14364475706046 L63 -H74 -0.148776335903783 Y70 -S79 -0.150181438224937 A67 -I78 -0.150493168505817 T54 -A62 -0.154926062186382 I64 -Y70 -0.156950453063761 L63 -G71 -0.157802920226672 K51 -M56 -0.158821112021431 V43 -R50 -0.160038681183795 A72 -L81 -0.161481488565641 A57 -L63 -0.16206577515744 A67 -W73 -0.16308654935553 R59 -I68 -0.163600254212222 V49 -T54 -0.164567050575752 T54 -V60 -0.164586834884814 I64 -W73 -0.169826416338986 R59 -A66 -0.17051846616578 A66 -A72 -0.172714402942093 L53 -R59 -0.172894193187124 A67 -A72 -0.174145328970859 S35 -S40 -0.178612612492191 Y52 -F58 -0.179407252871713 A67 -H74 -0.186820563590901 A37 -E44 -0.192477822364604 K51 -V60 -0.193476647678863 W73 -I78 -0.198856781040444 L63 -I68 -0.200268231366652 V60 -A67 -0.207462699022309 K51 -L63 -0.208160106050926 K51 -F58 -0.208420507389872 L63 -Y70 -0.210872477571995 G76 -I82 -0.214456606649045 A38 -V43 -0.217093580962235 Y70 -G76 -0.218586887422003 E44 -K51 -0.222659814267886 M56 -A62 -0.22859887397781 A66 -W73 -0.233101681243622 L63 -A69 -0.235093289457343 L65 -H74 -0.237422404061558 R48 -L53 -0.239814009340221 F58 -I64 -0.24825841627327 L65 -G71 -0.257474164842282 L55 -A62 -0.261493109152793 W73 -S79 -0.262700760940585 H74 -L81 -0.262807388329024 I64 -G71 -0.263746475591787 A72 -L77 -0.263855958976714 G76 -L81 -0.267098387599614 A36 -Y41 -0.270723524604888 R59 -L65 -0.271965195628382 G71 -I78 -0.272215067452595 G71 -G76 -0.281810942064912 A36 -E42 -0.286286429616807 I68 -N75 -0.309247402025511 A62 -I68 -0.325267859639681 A72 -I78 -0.333063431964154 S40 -H45 -0.340956294943024 I64 -A69 -0.351034929280051 V43 -V49 -0.352255368510977 L53 -F58 -0.356265333001446 H74 -S79 -0.360418074960481 V60 -A66 -0.365488571819788 A57 -A62 -0.422863117455177 V60 -L65 -0.445440327187522 I68 -H74 -0.475453579489756 A69 -H74 -0.510752741065404