[Mon Aug 29 17:41:29 2016] >Input file: TMA0A0U1AZV9M2G.pdb >TM segments: 491-500_ 504-517 MAIDEN score = -3.6542 Below is the ranking list of the residue pairs and their related pseudo-energy (the lower, the better). This includes inter-chain residue pairs. The maximum (least favorable) pairwise energy value has been set to 10. See the MAIDEN software article: Postic,G., Ghouzam,Y. and Gelly,J.C. (2015) Biochimie, 115, 155–161. ----------- ---------------- Calpha pair Empirical energy ----------- ---------------- N507 -K514 0.43313989495141 L512 -T517 0.359761561151215 A506 -K514 0.322574619723007 S496 -A506 0.302806463665907 R509 -E515 0.28771128821138 L508 -T516 0.241658141704395 Y491 -T516 0.226930659300173 R511 -T516 0.208146119776301 F493 -A499 0.20598452702326 S498 -N507 0.184773025239276 L508 -K513 0.18315594257526 Y491 -K513 0.171228644091068 S498 -L508 0.152589979403214 D505 -K513 0.137218183033016 N507 -K513 0.134347450424924 N507 -T516 0.125117852194598 S496 -N507 0.123368183969191 D505 -K514 0.112165543359901 S498 -T504 0.111994083263928 A510 -E515 0.111884924609771 D494 -D505 0.101142425656477 F493 -A506 0.0991589029483615 Y491 -R509 0.0968307003663096 D495 -L508 0.0952409466944917 D505 -A510 0.0944466139502076 S496 -L512 0.0923363300724809 D495 -L500 0.0912839723210288 R509 -T517 0.0848468819597678 F497 -L512 0.0817427270862088 F497 -D505 0.0805736539995152 F493 -R511 0.0791890310458006 L508 -E515 0.0699749962020484 D494 -R509 0.0686181558752859 T504 -L512 0.0558548831878065 F493 -T504 0.0535197948558364 A499 -A506 0.0485691815079883 N507 -L512 0.0438008491738966 T504 -K513 0.0428339135562178 F493 -K513 0.0414461103986159 I492 -F497 0.0405716824249298 T504 -R511 0.035705110498351 Y491 -S496 0.0290879324795386 F493 -R509 0.0206941478019503 I492 -E515 0.0188160121477101 A499 -N507 0.0126729526833849 F493 -E515 0.0111161042470351 I492 -T517 -0.00304207871828144 S496 -A510 -0.00636271289551082 I492 -R509 -0.00998893095095754 S498 -A506 -0.0118184594042621 S496 -R509 -0.0190907463355749 A506 -R511 -0.0235935797674891 D494 -L508 -0.028008041519628 Y491 -L508 -0.030204737006958 S498 -D505 -0.0313554317785534 Y491 -K514 -0.0319314138405034 S496 -K513 -0.0326804681272979 N507 -E515 -0.0331715391351461 A499 -L508 -0.0332476575627192 R511 -T517 -0.0355845952706724 L500 -A506 -0.0378149044957153 D494 -L500 -0.0401862528517297 Y491 -T517 -0.0443160232139064 L508 -T517 -0.0463461786515147 I492 -K513 -0.0501951958940507 S496 -L508 -0.0512757157594042 Y491 -A510 -0.0545992871118015 S498 -R509 -0.0588127691633933 F493 -D505 -0.0638847565073524 F493 -T516 -0.0658207645969978 D495 -R509 -0.0726959475101241 L500 -R509 -0.0729709593011076 I492 -R511 -0.0731939728900324 S496 -D505 -0.075592923119137 L500 -A510 -0.0761240369664291 S496 -R511 -0.0777466483595503 I492 -S498 -0.0793638392426375 I492 -L508 -0.0806302320961949 A506 -E515 -0.0847083651492264 D494 -L512 -0.0873374257057196 R509 -K514 -0.0909922652099886 D495 -L512 -0.0916739525115965 T504 -A510 -0.092289986408761 F497 -R511 -0.0923781313243159 I492 -K514 -0.0977367580537187 F497 -T504 -0.113450659689612 D495 -T504 -0.115226821739909 A499 -D505 -0.119725677696614 L500 -D505 -0.120296926121215 Y491 -R511 -0.124879361172932 A499 -T504 -0.125901210062731 D505 -R511 -0.128108632682145 Y491 -L512 -0.132594966263824 F497 -N507 -0.134810857127615 F493 -L508 -0.140271231537052 L500 -L508 -0.144889992822595 R509 -T516 -0.14740075508036 F493 -L500 -0.149607048989359 A510 -T517 -0.150994781007213 D494 -A499 -0.151319134430369 F493 -L512 -0.15393535432545 F493 -S498 -0.156131648734411 D495 -D505 -0.161011125108823 L500 -R511 -0.161926199107433 F493 -A510 -0.164442842260335 L500 -L512 -0.16558319267045 D495 -A506 -0.169959942602274 F497 -A510 -0.172779249838992 Y491 -E515 -0.178294641062121 F497 -R509 -0.17959363194246 F497 -A506 -0.182541247314131 A499 -R509 -0.186556496226637 T504 -R509 -0.20233887517287 S496 -T504 -0.214145139445542 L508 -K514 -0.215648724871986 A510 -T516 -0.218699853531827 I492 -T516 -0.221121199704421 F493 -N507 -0.230986837042385 A506 -L512 -0.239441742006099 F497 -L508 -0.250006441370547 L500 -N507 -0.253534367021219 D505 -E515 -0.268127875120916 D505 -L512 -0.305969449305628 I492 -L512 -0.317324749523596 A506 -K513 -0.322485217499936