[Fri Aug 26 17:55:31 2016] >Input file: TMA0A0W8KQH4M1D.pdb >TM segments: 352-369 MAIDEN score = -0.3165 Below is the ranking list of the residue pairs and their related pseudo-energy (the lower, the better). This includes inter-chain residue pairs. The maximum (least favorable) pairwise energy value has been set to 10. See the MAIDEN software article: Postic,G., Ghouzam,Y. and Gelly,J.C. (2015) Biochimie, 115, 155–161. ----------- ---------------- Calpha pair Empirical energy ----------- ---------------- Y358 -F367 0.236257439938709 G353 -Y358 0.172261102854637 Y358 -G366 0.169259480374267 Y358 -L365 0.139307199857343 A357 -A363 0.0999784820574501 A363 -L368 0.0901479526503184 S355 -Y362 0.075595714837581 L354 -N359 0.0601842355648019 S355 -I360 0.056334412547093 S361 -G366 0.0549676060929374 L354 -I360 0.0522663186002505 N359 -I364 0.0478888363238843 N359 -G366 0.0294346447690672 I360 -L365 0.00524519855139793 S361 -F367 0.00276812604152799 Y362 -L368 -0.00660407996541856 A357 -I364 -0.0222580719398096 N359 -F367 -0.0256483359729334 S355 -S361 -0.0272380673377461 F356 -I364 -0.0755386034477996 Y358 -A363 -0.0851549731802441 F356 -S361 -0.0922977972266045 F356 -A363 -0.128072751980348 I364 -T369 -0.153989381346743 N359 -L365 -0.157524571460898 Y358 -I364 -0.160759561884334 Y362 -F367 -0.164541120889432 F356 -Y362 -0.174732584232775 A357 -Y362 -0.334082897208759