[Mon Aug 29 17:47:01 2016] >Input file: TMA0A0W8LKX7M1G.pdb >TM segments: 126-135_ 231-246 MAIDEN score = 0.2448 Below is the ranking list of the residue pairs and their related pseudo-energy (the lower, the better). This includes inter-chain residue pairs. The maximum (least favorable) pairwise energy value has been set to 10. See the MAIDEN software article: Postic,G., Ghouzam,Y. and Gelly,J.C. (2015) Biochimie, 115, 155–161. ----------- ---------------- Calpha pair Empirical energy ----------- ---------------- L234 -M239 0.800122585769078 G128 -V133 0.585111383822438 W130 -E135 0.577920963694827 C236 -M241 0.513371567829533 M231 -C236 0.466199242631382 V235 -T240 0.450151061650915 S232 -F237 0.390887886758482 M233 -L238 0.336210444145659 S232 -L238 0.256423653521656 C236 -T244 0.219047359195175 S127 -V133 0.211613864415485 S127 -S134 0.203127716444842 G128 -S134 0.182123425683237 M233 -V242 0.133278929924957 G128 -E135 0.118448244572131 S232 -T240 0.114026189521018 C236 -S245 0.11204949754204 T240 -G246 0.100575438601074 M231 -T240 0.0905143478576481 C236 -L243 0.0842253559994912 V126 -Y132 0.0692720076109778 M231 -M239 0.0564082986009224 L238 -G246 0.0243018273419935 V126 -I131 0.0212925524528251 M239 -G246 0.0131246946375521 M241 -G246 0.00853299515985639 M233 -M241 0.00162937974721222 M231 -F237 0.00123633692936487 M239 -T244 -7.11735423433169e-05 L234 -S245 -0.000862970372161657 V126 -V133 -0.00380216982830328 S232 -V242 -0.0233959866793096 T240 -S245 -0.0286391266603938 L234 -L243 -0.0346586429670221 S127 -Y132 -0.0348947163032003 F237 -S245 -0.0417982008184119 S232 -M241 -0.05147404700962 V235 -M241 -0.054418387794287 V235 -S245 -0.0617125575878852 V235 -T244 -0.0786451834410211 L234 -T244 -0.0821643140092769 M233 -L243 -0.0921609300408421 A129 -E135 -0.149811026142231 M231 -M241 -0.157208360309501 L234 -M241 -0.159667019810268 L234 -V242 -0.165165771214107 F237 -L243 -0.178173757388876 S232 -M239 -0.191798574536762 M239 -S245 -0.193144283099175 C236 -V242 -0.203458753729091 F237 -T244 -0.205800751329867 L238 -S245 -0.214834959095163 L238 -T244 -0.278569229908862 M233 -T240 -0.283295155996885 M233 -M239 -0.294706421708669 V235 -L243 -0.296406512246646 L234 -T240 -0.316074424392733 F237 -V242 -0.318826132357831 V235 -V242 -0.3472499286697 L238 -L243 -0.373416462460334 M231 -L238 -0.435854655288455 A129 -S134 -0.544236912956721