[Fri Aug 26 18:01:52 2016] >Input file: TMA0A109I558M1D.pdb >TM segments: 330-373_ 487-512 MAIDEN score = -11.7534 Below is the ranking list of the residue pairs and their related pseudo-energy (the lower, the better). This includes inter-chain residue pairs. The maximum (least favorable) pairwise energy value has been set to 10. See the MAIDEN software article: Postic,G., Ghouzam,Y. and Gelly,J.C. (2015) Biochimie, 115, 155–161. ----------- ---------------- Calpha pair Empirical energy ----------- ---------------- L338 -E492 0.838139538925741 I334 -S499 0.75263640675142 K336 -L341 0.566569707222598 N337 -L495 0.531072120950197 N349 -K356 0.43367049476505 L341 -R489 0.425370677440559 K501 -A506 0.424751253112923 L330 -M502 0.385212263004158 L330 -Q335 0.358117143724451 L341 -M488 0.345637537104821 N349 -R489 0.342652691230727 E346 -Q354 0.337841583465765 T490 -C498 0.336355114343022 V344 -M488 0.334170296572624 I497 -M502 0.331669891015582 L495 -R500 0.318768646640526 K336 -Q491 0.316203370894599 L338 -L495 0.313801906468428 M488 -N496 0.309615654202504 L341 -E346 0.301327368427301 Q335 -E492 0.295323197798131 M502 -D511 0.294980380442705 N337 -R489 0.288008324489518 T345 -R489 0.287928001553202 K332 -S340 0.28177737552915 L351 -K356 0.278519931073579 V344 -D487 0.277811908115338 N337 -E346 0.275292954715524 L351 -E357 0.266895991149566 Q335 -Y503 0.261961592754929 E331 -K336 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