[Mon Aug 29 17:51:23 2016] >Input file: TMA0A109IBD7M1G.pdb >TM segments: 53-67_ 202-211 MAIDEN score = -3.9046 Below is the ranking list of the residue pairs and their related pseudo-energy (the lower, the better). This includes inter-chain residue pairs. The maximum (least favorable) pairwise energy value has been set to 10. See the MAIDEN software article: Postic,G., Ghouzam,Y. and Gelly,J.C. (2015) Biochimie, 115, 155–161. ----------- ---------------- Calpha pair Empirical energy ----------- ---------------- L64 -M203 0.574106559234145 I53 -D58 0.549181800954958 I205 -M210 0.503675089054029 K59 -L64 0.399313369416724 A60 -G202 0.316634987580236 G66 -G202 0.313503296966128 G62 -G202 0.312555346268632 D55 -G62 0.253780007117104 F57 -Q211 0.235286705952306 D58 -D204 0.23044454056389 Q54 -K59 0.22931032458186 D55 -R65 0.178858505240144 Q54 -Q211 0.168764263992511 A60 -R65 0.165312964230879 D58 -M207 0.163616055094547 D55 -A60 0.151540024362761 Q54 -G62 0.150171232993784 G63 -G202 0.12611287100025 D204 -N209 0.109312763374754 I53 -I205 0.107669199739563 K59 -I205 0.105131101306676 G62 -M203 0.104332512152127 L64 -G202 0.10278123197896 K59 -D204 0.0935342544177946 F56 -T206 0.0921864942827886 I53 -K59 0.0904898293062821 F56 -K208 0.0832551309824625 F56 -Q211 0.080691629749766 F57 -T206 0.0800543935957139 Q54 -M210 0.0796726404812893 A60 -N209 0.0744638988364796 G62 -I205 0.0640438444477782 D58 -G63 0.0613508264688329 K59 -I67 0.0540836227118362 K59 -R65 0.048127618534723 F56 -M203 0.0478512072510013 I53 -T206 0.0472175669292216 F56 -M207 0.044075278617485 F57 -I205 0.039966456001824 Q54 -N209 0.0321039153557692 F57 -M210 0.0317664801775486 L61 -M207 0.0272802618724537 L61 -M203 0.0254545056033795 G66 -M203 0.0156803225482403 I53 -N209 0.0129228320143251 I53 -M207 0.00326831678934658 D58 -G66 0.00132701329113538 G63 -I205 0.00126038509801019 L64 -T206 -0.00201278664952964 Q54 -G63 -0.002423957660735 D55 -G63 -0.00487754865824463 A60 -M203 -0.0112092210562711 F57 -R65 -0.0114412123322902 A60 -M207 -0.012043017172749 F57 -G63 -0.0139466023702735 F57 -M207 -0.0238537045816956 D58 -R65 -0.0252258106842334 D204 -Q211 -0.0285936861395863 F57 -G66 -0.0293148313531049 F56 -L64 -0.0307342373030632 A60 -M210 -0.0323394527073761 D58 -I67 -0.0343677370457328 I67 -D204 -0.0358907977716871 F57 -N209 -0.0405912047232961 Q54 -M207 -0.0458758949052587 I53 -G63 -0.0482991258417012 F56 -G66 -0.0507686512737662 L61 -M210 -0.0521784990559109 F57 -G202 -0.0534308671151956 A60 -D204 -0.0547140066091547 D58 -M203 -0.0560975558807115 F57 -D204 -0.0589257762242902 R65 -D204 -0.0593293780942119 Q54 -I205 -0.0605479842752299 R65 -G202 -0.068759978266689 L61 -D204 -0.0727464514937175 D58 -T206 -0.072912987254413 R65 -I205 -0.0734378624587819 I53 -G62 -0.0739620397891034 R65 -M203 -0.0826632314732629 F56 -L61 -0.0843106540714773 L64 -I205 -0.0879133919918903 G62 -I67 -0.0949398870031786 F56 -D204 -0.0954679485631846 L61 -T206 -0.0962106777430138 I53 -L61 -0.0984034344364937 F56 -I205 -0.0986335992216114 F56 -R65 -0.103082097797098 I53 -K208 -0.103287075965695 G63 -D204 -0.109653326925828 D55 -L64 -0.11145336125649 F56 -G63 -0.114229983094968 I205 -Q211 -0.117687110225766 A60 -T206 -0.127479932489125 G62 -D204 -0.12818300632251 M203 -M210 -0.129845755002234 T206 -Q211 -0.131862788270802 I67 -G202 -0.142236468099391 K59 -M210 -0.14305492118732 D58 -I205 -0.14526262306469 K59 -G202 -0.145377963279293 K59 -G66 -0.145979003773718 F56 -N209 -0.146395543096037 L61 -G202 -0.151193259945363 D55 -M210 -0.153833185038259 D58 -M210 -0.154616131340968 F56 -G62 -0.172416420821581 A60 -G66 -0.17279397739406 G63 -M203 -0.180617975763258 F57 -L64 -0.187754909234104 A60 -I205 -0.188418791291221 K59 -M203 -0.191226755394908 M203 -N209 -0.195143364267394 I53 -A60 -0.195304289400586 D58 -L64 -0.200504203010932 D204 -M210 -0.209695361502693 F56 -M210 -0.214990967985175 Q54 -A60 -0.224058834168726 I53 -Q211 -0.224996121876228 A60 -I67 -0.225894753911592 Q54 -L61 -0.234402960580261 F57 -M203 -0.248851460024942 D55 -L61 -0.263537010731183 F57 -G62 -0.264155762314899 I67 -M203 -0.26953015754746 L61 -I205 -0.293364872810105 L64 -D204 -0.304548086541846 F57 -K208 -0.353284130566079 L61 -I67 -0.371597583821175 I53 -M210 -0.408289130281511 L61 -G66 -0.408671241190569