[Fri Aug 26 18:03:49 2016] >Input file: TMA0A109SAM6M1D.pdb >TM segments: 273-293_ 319-340 MAIDEN score = -21.0822 Below is the ranking list of the residue pairs and their related pseudo-energy (the lower, the better). This includes inter-chain residue pairs. The maximum (least favorable) pairwise energy value has been set to 10. See the MAIDEN software article: Postic,G., Ghouzam,Y. and Gelly,J.C. (2015) Biochimie, 115, 155–161. ----------- ---------------- Calpha pair Empirical energy ----------- ---------------- L293 -P326 0.54761958562819 R276 -L281 0.371491132192324 G320 -L327 0.276134449077881 S274 -S283 0.224983946626223 V286 -L291 0.172628971485016 S285 -V290 0.155686189222279 V286 -V328 0.139075309436568 S285 -L293 0.118354040634677 A289 -H325 0.118305137097148 A289 -L332 0.11487257579499 L319 -L327 0.113962457513719 L319 -P326 0.112313062748108 V329 -A337 0.111584320147281 A289 -V330 0.109760014299447 L293 -L332 0.106808715161078 A280 -G288 0.106205248629223 H325 -G331 0.10581589007466 V290 -L327 0.102968036313757 G288 -V329 0.0979908253610255 L293 -V330 0.0953242942761294 R276 -F284 0.0931145423376214 S285 -A292 0.0911484123279749 A289 -P326 0.0910780411785188 V290 -L332 0.0908986650223322 L291 -P326 0.0873611891355299 F284 -L293 0.0828177534295658 L291 -V329 0.0823206469772713 W324 -G331 0.080070147360904 L293 -A321 0.0797968793508108 L277 -L282 0.073668418588265 A292 -V328 0.0728172807985255 V286 -P326 0.0705730123149459 R276 -S283 0.0702370258349636 S285 -V329 0.0644453174535604 G320 -P326 0.0576190443446278 G275 -S283 0.0531346346996748 G320 -V329 0.0522321880129211 Q322 -V329 0.0516084770012677 L277 -S285 0.0491205176047655 L282 -V290 0.0442808952239666 S274 -L282 0.0439446979250029 S285 -I333 0.0434627410403814 H325 -I333 0.0415700663009132 G320 -V328 0.0398501397740125 A289 -L327 0.0332749604435552 S283 -L291 0.0321344929404561 F284 -L291 0.019093788585284 V290 -I333 0.0188329173036728 H325 -L332 0.0170213951164317 V286 -L327 0.0120840846068533 V290 -V330 0.011912130545217 A292 -P326 0.0107369298981297 L277 -F284 0.00834546994281515 L291 -W323 0.00799993194897652 A292 -V329 0.00691561468032986 A289 -V328 0.00424937486695254 G275 -F284 0.00217048816071141 G288 -L332 -0.000709041083037043 P326 -A334 -0.000797250596177523 F284 -A292 -0.00427330200083276 Q322 -V328 -0.00658854854617097 V286 -V329 -0.00907466968987958 F279 -A289 -0.00937619558072278 P326 -I333 -0.0115092531830837 V290 -Q322 -0.0130964243486922 A321 -V328 -0.0148736968464531 P326 -L335 -0.0156148245068444 L293 -L327 -0.0252824386685347 L291 -V328 -0.0264330460613795 A289 -I333 -0.0270570627025624 V286 -V330 -0.0284533719106994 A289 -G331 -0.0291936423308021 L277 -V286 -0.0292311128120515 G331 -M339 -0.0322439288006606 L282 -L291 -0.0331419034229405 V290 -H325 -0.0377141188369192 V287 -V329 -0.0432483361391579 A280 -V287 -0.0505313804219094 L293 -Q322 -0.0505457262677775 F279 -G288 -0.0541991656411551 V328 -A337 -0.0571722498741032 R276 -S285 -0.0606491181041366 F279 -V287 -0.0611285349323465 F279 -S285 -0.0628403855765458 V328 -I338 -0.0648123334864525 A289 -V329 -0.0694022042573383 L281 -A289 -0.0706521544659884 V286 -I333 -0.0722872333222755 V329 -I338 -0.0778355636744426 A280 -A289 -0.078364496167358 V328 -V336 -0.0794997211837241 A289 -W323 -0.0795535203683531 L281 -V290 -0.0831874864052473 G288 -P326 -0.0832799891457194 L282 -V287 -0.0838150170835092 A292 -L332 -0.0868755356193445 S285 -V330 -0.0883112705803433 L278 -V286 -0.0897128375780341 F279 -F284 -0.0897476169928417 L327 -V336 -0.0898774872711714 S285 -L332 -0.0918756336930153 V290 -V328 -0.0929540948144775 G275 -L281 -0.0944673617601703 L293 -G331 -0.0952535792631668 V273 -L282 -0.0970636141721384 L293 -L319 -0.0973259541001585 A321 -L327 -0.100300625265112 L282 -I333 -0.101861804792933 V328 -A334 -0.103246346304322 L278 -V287 -0.103910683295682 V286 -L332 -0.10513435299199 G331 -I340 -0.107446779050333 V330 -M339 -0.109648259114702 L335 -I340 -0.111111873600496 L282 -V329 -0.111258972298663 L327 -L335 -0.115591651674078 H325 -V330 -0.118015622874811 V290 -W323 -0.128400189538453 W323 -V330 -0.128413910045671 L281 -G288 -0.130797009559772 I333 -I340 -0.131625962331213 A292 -W323 -0.133083184825513 A292 -L327 -0.137466754302833 L332 -I340 -0.137722619872903 A321 -P326 -0.14315728498271 V286 -A292 -0.144938437934377 R276 -L282 -0.146143704336446 V273 -A280 -0.14895289965326 V290 -W324 -0.15425360075248 A292 -H325 -0.15890202596058 L278 -F284 -0.160143300972567 L293 -V328 -0.163402465658526 V330 -A337 -0.165329205957358 L282 -A289 -0.166198279063267 G275 -L282 -0.167415348041609 W324 -L332 -0.169956508445421 L327 -A334 -0.178508302645455 A334 -M339 -0.186244720831177 L278 -S285 -0.191342105233476 V273 -L281 -0.194159747623507 G288 -L293 -0.194861632394982 V287 -A292 -0.203689928822142 G320 -H325 -0.204330046287275 S274 -A280 -0.208969291759417 L293 -W324 -0.212550186111314 V290 -P326 -0.214400279034821 S283 -A289 -0.214604559414241 V330 -I338 -0.217423589463349 S274 -L281 -0.22046542019664 S283 -G288 -0.221048094030371 W323 -G331 -0.223388953064233 V330 -V336 -0.237442124857605 F284 -A289 -0.238803763755129 G331 -V336 -0.242653041394934 L319 -W324 -0.249229258532441 P326 -G331 -0.251067254598993 S274 -F279 -0.255066947083573 L319 -H325 -0.256798702567503 G331 -A337 -0.260455609451083 V329 -V336 -0.26461476894631 L293 -H325 -0.269632491190621 I333 -I338 -0.274220374663091 V287 -L293 -0.28264558530267 V286 -L293 -0.291590758051914 W324 -V329 -0.292059498965589 S283 -V290 -0.295444881086631 G331 -I338 -0.299223318303244 V328 -L335 -0.299685789140769 L332 -A337 -0.302634486186955 L332 -M339 -0.306006897094842 L293 -W323 -0.306921501336404 I333 -M339 -0.315064182219256 L282 -G288 -0.316638572300133 F279 -V286 -0.321789293948265 G275 -A280 -0.325007497017843 V273 -F279 -0.327733724152307 A334 -I340 -0.329215156480813 S285 -L291 -0.331497739312312 L277 -S283 -0.33157740964256 W324 -V330 -0.334466291023668 V330 -L335 -0.34038653682159 L281 -V286 -0.344440110242241 W323 -V329 -0.348881333808809 L278 -S283 -0.351181824973097 V290 -V329 -0.353109825973195 A280 -V286 -0.370209673273632 L327 -L332 -0.371590185222839 V329 -L335 -0.374478647801631 F284 -V290 -0.376770673527731 L332 -I338 -0.387880275872835 L293 -V329 -0.394951728441384 W323 -V328 -0.398506396784648 L281 -V287 -0.399322317617333 L327 -I333 -0.410772322748645 Q322 -L327 -0.429343306691716 P326 -L332 -0.441137132912614 V329 -A334 -0.449809810482559 V273 -L278 -0.465164672465506 V328 -I333 -0.477194517637557 A280 -S285 -0.540770171963507