[Fri Aug 26 16:33:23 2016] >Input file: TMA0M8T4S1D.pdb >TM segments: 520-545_ 547-564_ 639-654 MAIDEN score = -6.0620 Below is the ranking list of the residue pairs and their related pseudo-energy (the lower, the better). This includes inter-chain residue pairs. The maximum (least favorable) pairwise energy value has been set to 10. See the MAIDEN software article: Postic,G., Ghouzam,Y. and Gelly,J.C. (2015) Biochimie, 115, 155–161. ----------- ---------------- Calpha pair Empirical energy ----------- ---------------- I530 -K536 1.40488473502161 C524 -R555 1.1971380317696 I521 -L526 1.14159487495197 L526 -Q552 1.03155672113718 F533 -I539 0.66647226339083 I521 -R560 0.570930488127963 L526 -I556 0.451727639655871 I530 -E535 0.39594292601814 C524 -L558 0.395056098647119 E528 -K536 0.390983170429186 L541 -T547 0.383513277352758 K532 -Q552 0.365219591923289 C524 -G551 0.358847371230547 V520 -R560 0.358024684508567 E527 -K536 0.352782165087794 C524 -I556 0.333814625208893 V520 -V562 0.33097335997909 D529 -Q552 0.324071878409061 D529 -R553 0.319571434010032 G545 -A554 0.305094687864569 S641 -Y647 0.303369536359659 R553 -L558 0.302244264258887 G544 -S549 0.299434780412134 Q525 -K532 0.296016374247117 E648 -F653 0.273971706200748 V520 -D537 0.263488607980846 V520 -Y563 0.263421373094118 C524 -K564 0.262686109788506 S531 -N538 0.259252239703596 Q525 -Y563 0.256750621487114 Q525 -S557 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