[Fri Aug 26 16:36:02 2016] >Input file: TMA0PP38M4D.pdb >TM segments: 485-518 MAIDEN score = -3.5445 Below is the ranking list of the residue pairs and their related pseudo-energy (the lower, the better). This includes inter-chain residue pairs. The maximum (least favorable) pairwise energy value has been set to 10. See the MAIDEN software article: Postic,G., Ghouzam,Y. and Gelly,J.C. (2015) Biochimie, 115, 155–161. ----------- ---------------- Calpha pair Empirical energy ----------- ---------------- R492 -A497 1.03886843651856 R494 -V499 0.755472410030388 G503 -V509 0.676765139212778 I489 -V499 0.563877582311964 V501 -C512 0.465094732473982 L486 -I511 0.46075229652895 R492 -V499 0.434081482495608 A493 -V499 0.432168098573699 C512 -E517 0.390050326109987 V500 -C512 0.379296726518504 A493 -T498 0.360048862407267 E491 -T498 0.332167220931565 L486 -V508 0.318341087269893 V508 -D513 0.309640847979273 G503 -E517 0.300607712089169 V502 -V518 0.281219762410599 V502 -D513 0.27373556212905 V501 -V508 0.261359440848851 Q487 -P507 0.247291313830539 E506 -Q514 0.241768676110286 R492 -T498 0.230298794532495 L486 -P507 0.22852742995466 H504 -C512 0.224496028094726 V509 -V515 0.224323555292568 Q487 -C512 0.219597969823676 G503 -A510 0.215610300325837 V501 -V509 0.21067198314075 G503 -V518 0.199046681405431 A490 -C512 0.193877370406205 H504 -V518 0.192823153204416 V485 -R492 0.191819217569696 H504 -V515 0.183113352685851 G496 -C512 0.180580556009177 T498 -I511 0.179631628677289 G503 -V515 0.179293781366842 R494 -D513 0.177957744815754 R505 -D513 0.173058913524969 E506 -V515 0.165424648795965 A493 -V501 0.16503643229321 V485 -V500 0.151813346551124 G503 -C512 0.15022693444644 A490 -I511 0.150031152384711 V499 -A510 0.149351625186585 V485 -C512 0.148312423447537 A488 -R494 0.148244492146385 A488 -V501 0.147522311907805 T498 -Q514 0.140517663011895 V499 -V518 0.139373042576209 T498 -D513 0.136585382626764 I489 -G496 0.132195573968105 L486 -V509 0.129594132730132 A488 -V508 0.124676637350152 V509 -V518 0.117639929042726 L486 -G503 0.116892828226195 V499 -V508 0.115461186230347 P507 -D513 0.11420227771981 H504 -V509 0.111422781343595 V499 -C512 0.107603777210924 T498 -V509 0.104491118224575 V502 -Q514 0.101648445399067 A493 -Q514 0.0987155603951528 Q487 -R494 0.0963681829114855 V501 -E517 0.0950881556952234 L486 -V502 0.0874337492547523 V501 -D513 0.0868093059014932 R492 -V500 0.0858961148213715 G503 -Q514 0.0814697436989448 L486 -E491 0.0759977261057436 L486 -E506 0.0714266084897613 A493 -A510 0.067093701284346 A488 -V500 0.0670294474435744 A490 -V500 0.066361623339974 E506 -E517 0.0658831153769773 H504 -V516 0.0657538053627373 V485 -I511 0.0654649089796671 V499 -Q514 0.0619301600314962 A490 -V501 0.0589140915483464 C512 -V518 0.0584088932034081 Q487 -A510 0.0548642370835419 A490 -A497 0.053518303695947 V502 -A510 0.0531929820833064 G496 -V501 0.0522321880129211 R505 -V515 0.0521020672539836 Q487 -A493 0.0511667023002457 A488 -I511 0.0504190010022754 Q487 -R492 0.0502556658488835 A490 -D513 0.0481876814710773 V508 -Q514 0.0480871990119387 R505 -E517 0.0470826193734917 T498 -C512 0.0466339864436787 A488 -A497 0.0451914372313365 V501 -V515 0.0450050462104805 V500 -E517 0.0361893883951603 V500 -A510 0.0329479081155553 I489 -V500 0.0317399667825935 T498 -V515 0.0236219296111826 L486 -R505 0.0228776974474671 P507 -Q514 0.0198832691244464 I489 -V502 0.0168479936523287 V509 -E517 0.0148866924625483 A490 -V515 0.0148797472910296 Q487 -V501 0.0123970891108938 G503 -I511 0.0115106313140587 P507 -V515 0.0112668735589363 E506 -D513 0.0109742527755086 V485 -P507 0.00917799147039666 V502 -P507 0.00838716512561805 T495 -D513 0.00445212059486177 V502 -I511 0.0035863008104613 I489 -A510 0.00261604901750002 V508 -V515 0.00260016330802237 A490 -V508 0.00123251864219442 V485 -G503 0.00120314634374985 H504 -A510 0.000607458881627165 G503 -V508 0.000480625495724141 Q487 -V500 -0.000310809776741916 V485 -A493 -0.00486479919107619 Q487 -T498 -0.0061353940642852 V501 -Q514 -0.00681841075033418 A488 -V509 -0.0070879462416098 R494 -I511 -0.00789353753527522 A497 -C512 -0.00828184466397497 H504 -I511 -0.00860989514442445 V485 -A497 -0.00968151905996639 I489 -V509 -0.0103353898534753 V499 -V509 -0.0105804305811383 Q487 -V509 -0.0105811177924195 I489 -Q514 -0.0117278865101316 L486 -A497 -0.0138734040540358 A490 -P507 -0.0164898493092287 L486 -A493 -0.0172773798569548 A510 -V516 -0.0177244848675255 Q487 -V499 -0.0178050680950559 Q487 -A497 -0.0184322465020839 R492 -I511 -0.021986888282469 R505 -I511 -0.02202626351596 T495 -V500 -0.0221298176344797 R492 -V501 -0.0222057335597929 A490 -Q514 -0.0235314583569846 R494 -Q514 -0.0237368374781921 L486 -V499 -0.0249051355105738 V500 -P507 -0.0259744078716957 V485 -A510 -0.0300186050307133 Q487 -T495 -0.0367232991021627 L486 -T498 -0.0395267738889507 T495 -I511 -0.0395292305985064 T495 -C512 -0.0429456734797284 V485 -V502 -0.0432978783150675 A493 -V509 -0.0451200926423141 A488 -C512 -0.0498815225413666 I489 -T498 -0.0522709672416113 A490 -V502 -0.0526831051892822 V500 -R505 -0.0527546353969317 P507 -C512 -0.0533029369567011 A493 -V515 -0.055108348725422 R494 -V501 -0.0552396380369533 A488 -T495 -0.0568781948279664 E506 -I511 -0.059318549330474 I489 -V501 -0.0617365308845841 A493 -D513 -0.0625888032315345 A490 -V509 -0.0662687944121547 A493 -V500 -0.0664781932610126 V501 -P507 -0.067703239148726 Q487 -D513 -0.0693043765686556 A488 -A510 -0.0736955839123856 A488 -G496 -0.0780971059065996 V499 -D513 -0.079363925204432 L486 -D513 -0.0847506104558631 V485 -V509 -0.0853530537137031 I489 -I511 -0.0860851277030124 V485 -V501 -0.0897235537494061 E491 -A510 -0.0900865425137749 H504 -E517 -0.09163137009089 V499 -V516 -0.0923617743534542 A490 -T498 -0.09271411178758 I511 -V516 -0.0931395219671387 V500 -V508 -0.0932753341645003 R505 -V516 -0.0941506820376903 Q487 -G496 -0.0953304271466391 A490 -G496 -0.0962693914322481 V485 -G496 -0.0979314942364975 L486 -G496 -0.104393950344853 V509 -V516 -0.104895803664162 T498 -V516 -0.105225426837401 E506 -V516 -0.105228401216196 R494 -V500 -0.106649238485873 I489 -G503 -0.109560510609267 V485 -V499 -0.110526900182657 R492 -D513 -0.116388665407984 E491 -V509 -0.118882493128948 V502 -C512 -0.12046854411372 E491 -D513 -0.124260434074617 G503 -D513 -0.125728982818121 E491 -V508 -0.131195689621844 A488 -T498 -0.131759547818382 I489 -P507 -0.131983552998378 Q487 -I511 -0.133319981603466 V500 -I511 -0.133815448994482 R505 -A510 -0.13537967642871 V500 -E506 -0.13647220010976 V485 -T498 -0.136599063848199 V501 -A510 -0.137867108814707 Q487 -V508 -0.139161259239557 E491 -V501 -0.141401377788574 E491 -V500 -0.144727013174557 G503 -V516 -0.146046425257529 V500 -V516 -0.148907347586755 A488 -V499 -0.15654883814564 V501 -V518 -0.159357227399609 V500 -V518 -0.159811702423141 I489 -D513 -0.160144791422868 R494 -V515 -0.163445739506101 I489 -V508 -0.164629356338039 V499 -I511 -0.180823522417287 L486 -A510 -0.185140162711809 A490 -A510 -0.192033281724869 E491 -I511 -0.193809152745703 V502 -V509 -0.195929615034114 V501 -E506 -0.198257722181248 L486 -R492 -0.201148769081043 A490 -T495 -0.205365329245388 I489 -T495 -0.216202391671972 L486 -V500 -0.222959508052206 I489 -A497 -0.223780143023154 V500 -V515 -0.232031018058484 E491 -A497 -0.234775356187953 A493 -C512 -0.237867735491667 V485 -E491 -0.238754235462212 A488 -A493 -0.24786543115444 A493 -I511 -0.249057654292005 V500 -D513 -0.257442976250876 E491 -G496 -0.266794143320573 V499 -V515 -0.268475747268242 A510 -V515 -0.270596037698849 L486 -V501 -0.283450628440428 E491 -V499 -0.284981431889399 V485 -R505 -0.288523758177035 V502 -V515 -0.3161076768296 V500 -V509 -0.318620382078519 R505 -C512 -0.331012164219641 V502 -E517 -0.337645189885585 V485 -V508 -0.347540314901564 V502 -V508 -0.348873035343697 V502 -V516 -0.351230097707221 V501 -V516 -0.353075708957736 I489 -C512 -0.364218532657146 E491 -C512 -0.383664254627405 V500 -Q514 -0.39722092826359 I489 -R494 -0.404649575673408 E506 -C512 -0.413589293269007 V501 -I511 -0.415937721639228 A490 -V499 -0.427087049822598 V509 -Q514 -0.431897528865374 V485 -A490 -0.437356031675151 L486 -C512 -0.449976063293455 R492 -C512 -0.567241544415898 R494 -C512 -0.607037569110834