[Mon Aug 29 16:55:25 2016] >Input file: TMA0QPZ9M3G.pdb >TM segments: 402-410_ 480-496 MAIDEN score = -0.3561 Below is the ranking list of the residue pairs and their related pseudo-energy (the lower, the better). This includes inter-chain residue pairs. The maximum (least favorable) pairwise energy value has been set to 10. See the MAIDEN software article: Postic,G., Ghouzam,Y. and Gelly,J.C. (2015) Biochimie, 115, 155–161. ----------- ---------------- Calpha pair Empirical energy ----------- ---------------- Y405 -Q483 0.47410756042234 Q490 -Q496 0.455858471820878 P481 -S486 0.352465839903212 Y405 -P488 0.296279297627698 T491 -Q496 0.216906201441175 S485 -A492 0.198845264809858 I482 -T491 0.189252471682011 Q483 -P488 0.187808831172621 R408 -Q490 0.152904145891576 P488 -G495 0.139582469612463 Y405 -Y410 0.13302176347947 D407 -H484 0.131691696779454 Y410 -I482 0.129641110502434 S486 -A492 0.115311081449061 P403 -S486 0.102025031308234 P481 -A492 0.0990307394366328 Y405 -F489 0.0744341087006717 Y405 -I482 0.0624955455763749 H484 -A492 0.0466180834736208 I480 -S485 0.0453359354692644 R408 -T491 0.0441318230734318 H484 -Q490 0.037394651761282 Q483 -T491 0.0324838365042774 W409 -I482 0.0297502358289687 I487 -A492 0.0272136429638543 P488 -Q496 0.0247240831194642 I487 -Q494 0.0158282661108755 A404 -P488 0.0110698309027182 P403 -P488 0.00773795368054575 Y405 -H484 0.0050349399595282 F489 -Q494 -0.00690243609658081 R408 -I482 -0.00690490791838827 I480 -S486 -0.0114609658837677 I480 -I487 -0.0174677193554231 R408 -I493 -0.0227227268331633 H484 -I493 -0.0240328290754781 S486 -T491 -0.0261306831694312 W409 -H484 -0.0291193238424787 D407 -Q494 -0.0321883024493341 H484 -T491 -0.0351507893068539 P488 -Q494 -0.0353109080677929 R408 -Q494 -0.0376140877243494 W409 -I493 -0.0376380141956565 W409 -T491 -0.0415740214040481 P481 -I487 -0.0435183734577578 D407 -T491 -0.0578438727294861 A404 -W409 -0.060191624233743 I482 -I487 -0.0670679765598008 Y405 -S486 -0.0717228350857237 S485 -I493 -0.0896679992174891 D407 -Q483 -0.0909842584337051 I487 -Q496 -0.0926760110900076 P488 -I493 -0.105642500781504 H484 -F489 -0.108903161103756 W409 -Q483 -0.110279701392422 W409 -Q494 -0.110358913379118 I482 -P488 -0.119299748965169 N406 -I482 -0.124537029363012 Q483 -F489 -0.134935489282367 F489 -G495 -0.135080189278166 W409 -P481 -0.159370820625958 D407 -I482 -0.159728980769888 N406 -P488 -0.161762137255306 S485 -Q490 -0.192735024997488 P481 -T491 -0.1972943448308 S485 -T491 -0.221279404857644 Q490 -G495 -0.23310405448971 F489 -Q496 -0.432081933351236 H484 -Q494 -0.550803380452271