[Fri Aug 26 16:50:23 2016] >Input file: TMA0R2N6M1D.pdb >TM segments: 234-258 MAIDEN score = -3.4963 Below is the ranking list of the residue pairs and their related pseudo-energy (the lower, the better). This includes inter-chain residue pairs. The maximum (least favorable) pairwise energy value has been set to 10. See the MAIDEN software article: Postic,G., Ghouzam,Y. and Gelly,J.C. (2015) Biochimie, 115, 155–161. ----------- ---------------- Calpha pair Empirical energy ----------- ---------------- D251 -I256 0.67944383561281 F236 -T241 0.524767647211176 I235 -L240 0.502570112945722 N239 -M244 0.449359168001261 A237 -V242 0.43015140272387 L238 -A243 0.365240874155649 L246 -T253 0.240823002111485 L240 -G245 0.15941253503911 A237 -G245 0.136673628580436 Y252 -I257 0.136497061850071 N239 -A247 0.133398471700211 A247 -Y252 0.133350605751531 G245 -I250 0.125784496808969 S234 -V242 0.117143012773884 S234 -A243 0.102259698664296 A247 -T253 0.101697108104678 L238 -L246 0.0989164175322501 A249 -I257 0.0982987916832307 I250 -L255 0.0796855799164433 L246 -Y252 0.0605895644687684 L246 -L254 0.0586193946432183 V242 -I250 0.0548364065667748 G245 -Y252 0.0503386479377204 A247 -L254 0.0458206106821493 A237 -L246 0.0330419191526877 G245 -D251 0.0270464112938607 A249 -I256 0.00231666430973602 I235 -M244 -0.00186366193457888 G245 -L254 -0.00325180589717622 A249 -L254 -0.00693166296671532 A247 -L255 -0.00988372478360944 L240 -A249 -0.010106974165363 I250 -S258 -0.0129690440502649 F236 -L246 -0.0130827898194372 A243 -L248 -0.0296722190352261 D251 -S258 -0.0305956787647484 T241 -I250 -0.0401525255112363 A243 -I250 -0.0431303855910823 L240 -L248 -0.0450246466508695 F236 -G245 -0.0506473567490711 I250 -I257 -0.0609883613152418 L248 -L254 -0.0615682798628177 G245 -T253 -0.0637184696518469 F236 -V242 -0.0781686034494218 L240 -A247 -0.0866812918033162 D251 -I257 -0.0896524619877646 Y252 -S258 -0.0925360223673977 S234 -N239 -0.0942584887147396 L248 -I256 -0.0987842455975567 F236 -M244 -0.0999854883327176 T241 -A247 -0.101242710545581 I235 -G245 -0.102895152077656 M244 -D251 -0.106764506162183 T253 -S258 -0.114870197473226 M244 -A249 -0.127779065118354 T241 -A249 -0.128508680472198 N239 -G245 -0.131169074298366 I235 -T241 -0.135253046429068 F236 -A243 -0.1510406176304 I235 -A243 -0.158960925226761 L238 -A247 -0.165878698498975 A243 -A249 -0.17277799491557 L238 -G245 -0.173454559523371 N239 -L248 -0.178286880583901 A237 -A243 -0.184308705827175 N239 -L246 -0.194715341680048 M244 -I250 -0.201537207235129 T241 -L248 -0.221296112463488 S234 -T241 -0.227447269496932 L248 -L255 -0.229463475144077 T241 -L246 -0.229884802529318 A237 -M244 -0.233500759246803 V242 -A247 -0.236480091839159 A249 -L255 -0.240129571110279 L248 -T253 -0.253698019573807 L246 -D251 -0.300749059355603 V242 -L248 -0.311837439370764 I235 -V242 -0.326736632827549 V242 -A249 -0.341031284193329 S234 -L240 -0.342616213326594 I250 -I256 -0.37890411106577 L238 -M244 -0.450052140075181 L240 -L246 -0.467469134796175