[Mon Aug 29 17:08:39 2016] >Input file: TMA1BEC5M2G.pdb >TM segments: 373-398_ 463-497 MAIDEN score = -9.5279 Below is the ranking list of the residue pairs and their related pseudo-energy (the lower, the better). This includes inter-chain residue pairs. The maximum (least favorable) pairwise energy value has been set to 10. See the MAIDEN software article: Postic,G., Ghouzam,Y. and Gelly,J.C. (2015) Biochimie, 115, 155–161. ----------- ---------------- Calpha pair Empirical energy ----------- ---------------- L382 -W387 1.14501578287443 F383 -I394 0.606150037024957 R477 -I483 0.576195835550851 I379 -R385 0.542452277059297 T380 -E495 0.424282321608981 K376 -E495 0.393430596733183 Q465 -L470 0.387124787057414 A481 -A488 0.374264103402685 T380 -L493 0.34575239382988 C393 -G398 0.335731263634906 I483 -A488 0.324847868317756 H466 -G472 0.300727733736719 M384 -I492 0.289617303985921 R385 -M491 0.284792291251372 H466 -S471 0.27715678479751 M468 -Q476 0.275558506241561 Q476 -E495 0.263388207013539 K376 -A496 0.26254875183663 I483 -M491 0.252527062083433 Q465 -E474 0.249797844977721 T380 -D494 0.246317381624866 R482 -M491 0.230916558917622 I379 -C393 0.214271051994246 L382 -S389 0.210331941558706 T380 -I492 0.199586749644482 T380 -N388 0.195732763717881 G373 -I379 0.192687844701148 Q465 -Q476 0.188383736799014 T380 -A496 0.186282497932883 S377 -A496 0.186207339542609 Q476 -A496 0.18015881274781 R475 -D494 0.178401791830864 R477 -D494 0.176480638298707 G464 -L470 0.17467242871669 R477 -Q486 0.173421316585066 T378 -I394 0.172861979929222 G467 -R475 0.170107558822246 S377 -L493 0.167133060648785 W387 -I394 0.163005670769716 Q476 -A481 0.161546194901108 I480 -A488 0.157638426100073 I483 -I492 0.152747238649197 A381 -I490 0.150158916716658 I379 -E391 0.146471458878116 K469 -R477 0.141701522146549 I480 -M491 0.14125141147262 S377 -S389 0.139088172251015 S377 -R385 0.138288364500947 M384 -A488 0.137659347663672 L484 -M491 0.133390019891364 G467 -R482 0.133084766102676 K469 -Q476 0.132977721861129 L382 -M491 0.132626771120958 N395 -P489 0.12883847208804 T380 -N395 0.127259762813775 T380 -G392 0.12621630946017 I478 -L493 0.125472651373346 F383 -G392 0.125100436451619 I396 -I492 0.124440666493626 L382 -I394 0.12424304809646 I478 -Q486 0.123761922448038 A479 -A488 0.123739007145715 Q486 -I492 0.123635820008803 A381 -F386 0.122126871270636 I492 -T497 0.122108148960964 A381 -W387 0.120559045939801 A374 -A381 0.12024560605686 G375 -E495 0.119903721044437 S471 -A481 0.118582193248418 M468 -E474 0.117446049172883 N388 -N395 0.117016852858019 K469 -R475 0.115918329223145 G467 -A481 0.115886429193765 R385 -G392 0.115316150906826 G373 -E495 0.11467210351724 R390 -N395 0.113829667380938 F383 -R390 0.113562436578355 K469 -I478 0.112344140804104 T380 -I396 0.112322061441935 R477 -E495 0.110196718809765 R385 -I394 0.102862817106387 E474 -R482 0.102103444547029 G467 -I480 0.101007975469564 T378 -G392 0.100933560024689 L470 -Q476 0.100905455695315 L470 -I480 0.0977854264854612 R475 -T497 0.0970701000771044 H466 -A479 0.0945448003265663 A374 -I379 0.0922100811276803 R475 -R482 0.0921568504422531 I394 -M491 0.0912763421543237 L382 -L493 0.0910707387589507 R477 -A496 0.0888491521218793 A381 -G392 0.0874136943185349 A381 -C393 0.0842367017147214 L382 -N388 0.0831169556163132 R482 -L493 0.0825592608361601 R385 -N395 0.0824545122122382 K376 -D494 0.0800994857481074 R477 -L493 0.0799291105121962 R482 -R487 0.0786331460501701 H466 -A481 0.0775729913089744 Q465 -G472 0.0769915580266272 S471 -T497 0.0756801491824171 R385 -P489 0.0743726438868713 A479 -I490 0.0730002340874725 R477 -T497 0.0723928411478084 I379 -G392 0.0711395751990418 H466 -E474 0.0709032955141615 L484 -A496 0.0697547892555415 T378 -R390 0.0695713502793444 Q465 -R477 0.0680276828559134 E474 -A479 0.0676697994594613 F383 -G397 0.0667598018347002 A381 -A496 0.0650664176807454 A481 -P489 0.0636268044486146 G375 -N388 0.0607998860674596 L382 -I490 0.0606849493324018 A479 -Q486 0.0606794251501508 R477 -R482 0.0565788873974806 A381 -I394 0.0553129858408625 G472 -E495 0.0549385401028557 A481 -A496 0.0546347260141724 I379 -E495 0.0537087677842116 G398 -I490 0.0534330891347361 K376 -W387 0.0533175767262133 S377 -M491 0.0520252139278952 L470 -A481 0.0508519901184399 G375 -L493 0.0457060442466406 T380 -S389 0.044918973073925 S377 -T497 0.0444128613749482 H466 -Q476 0.0424858795915553 F383 -E391 0.0417723509272316 K376 -T497 0.0412259827405356 I483 -A496 0.0404801682247511 I396 -A488 0.0402266665233817 A488 -L493 0.0400242590194804 W387 -C393 0.0388944851856716 I379 -I394 0.0388671686837778 L470 -A479 0.0387420410066381 K376 -F386 0.0379331173834787 A479 -M491 0.0377267029886523 S471 -A479 0.037190904093761 K469 -E474 0.0371864874281398 F383 -P489 0.0371044201854689 G392 -G398 0.0345394764237041 I478 -T497 0.0339979813187226 F386 -N395 0.0338956165720719 A481 -L493 0.0332719395873204 Q476 -D494 0.03269305031332 G464 -R475 0.0319076421584557 E474 -A496 0.0311671062912264 A381 -D494 0.0298534795406358 I478 -M491 0.0283359507939807 S389 -N395 0.0276933324825954 G472 -A496 0.0263984163446809 I396 -P489 0.0259150982174496 G375 -D494 0.0255978639863885 G472 -A481 0.025083096397148 Q476 -L485 0.0248625986784843 N395 -M491 0.0232718004621013 R477 -I492 0.0221995810551434 I478 -R487 0.0218734658900734 G375 -S389 0.0217697823875227 R475 -I483 0.0172519809079166 H466 -G473 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