[Mon Aug 29 17:11:03 2016] >Input file: TMA1BEC6M4G.pdb >TM segments: 407-421_ 508-541 MAIDEN score = -7.1285 Below is the ranking list of the residue pairs and their related pseudo-energy (the lower, the better). This includes inter-chain residue pairs. The maximum (least favorable) pairwise energy value has been set to 10. See the MAIDEN software article: Postic,G., Ghouzam,Y. and Gelly,J.C. (2015) Biochimie, 115, 155–161. ----------- ---------------- Calpha pair Empirical energy ----------- ---------------- I530 -E535 1.31396121749311 L408 -K413 0.923578385028639 E535 -A540 0.778115382794255 Q519 -T526 0.442277491229147 V513 -R538 0.432728694444363 I530 -T536 0.426695358159372 L510 -R515 0.41248619646653 I518 -R523 0.4091014968217 P407 -K413 0.408925850638531 H532 -S539 0.367528985958437 P419 -P508 0.350255320263165 E511 -Q519 0.323389333680966 K413 -R525 0.323177912200601 T512 -S539 0.320679939538416 R515 -S539 0.307373249806772 E509 -T536 0.304402972176172 E509 -L534 0.298007970231882 L514 -Q519 0.292195346099074 P508 -N516 0.281212776520002 E509 -R515 0.28050879455269 Q414 -M522 0.264337378271438 V513 -S539 0.254218412658008 Q519 -E541 0.248134587198002 T512 -T527 0.245584556357627 T512 -T526 0.244508431003862 P508 -T536 0.229654041790742 V528 -E535 0.222499126053805 S517 -A540 0.213286335523141 T527 -E535 0.21308121647902 T512 -H532 0.2117727953674 T512 -E520 0.20292085160324 E520 -A540 0.197381667922708 P508 -H532 0.191514021421158 T512 -R538 0.189243314429561 T512 -I529 0.177294280883682 H412 -T526 0.176728461073927 N516 -T536 0.174837893432686 L408 -S416 0.174066230640709 Q519 -R525 0.170901707536254 W417 -T527 0.169651928205769 H412 -G524 0.164022875040521 I530 -A540 0.161960822881249 V528 -E541 0.161003599055449 S416 -H421 0.16089987282658 T527 -E541 0.148123287037031 R525 -S539 0.147870912089157 Q414 -R515 0.143404953672564 Q414 -R523 0.142837807304546 S517 -R525 0.142612917201869 I530 -I537 0.14087249974656 N516 -E535 0.140782283607492 P508 -R533 0.13940179551467 E509 -N516 0.138818380443736 Q519 -R538 0.135441295563003 V528 -S539 0.13298496324192 K413 -V528 0.130454401051789 I518 -G524 0.127515947236529 I415 -Q420 0.127425981333292 I518 -T527 0.127263342749536 T512 -E535 0.124761707154535 V528 -R538 0.123090330199394 L514 -E520 0.115917847605938 I518 -S539 0.115866051941476 R515 -T527 0.113646788409592 R515 -R538 0.109583493407572 G524 -E541 0.105627210979817 P419 -A531 0.105149993657667 S416 -T526 0.104051048245711 A531 -S539 0.101627224709989 P407 -H412 0.0943297673842189 L514 -I537 0.0938017842234385 V528 -R533 0.0917380465026083 E511 -H532 0.0914556719606527 E511 -E520 0.0909114913580638 V418 -T526 0.0908531544792335 P407 -Q414 0.0867463836057558 R525 -A540 0.084570757084693 R515 -T536 0.0836898390250963 N516 -L521 0.0799786538212874 L514 -R523 0.0791437928322216 E511 -T526 0.0786453333378079 Q414 -H421 0.0755899651341014 E520 -S539 0.0753386107140641 E520 -R525 0.0704731014967392 T512 -V528 0.0690850099245188 I415 -I530 0.0688553476960179 A410 -I415 0.0667599599106019 L514 -R538 0.0659950387294188 P419 -V528 0.0651561734872548 L510 -S539 0.0637155462752792 R515 -E541 0.0634992429922692 S517 -R538 0.0625403629009424 I529 -S539 0.0625217534641671 R533 -R538 0.0623681191033884 I415 -G524 0.0620301904527745 Q519 -V528 0.0604882975172339 T512 -R533 0.0604305984997207 N516 -V528 0.06012238728431 S416 -G524 0.0578046298870731 A531 -A540 0.0555622987055582 I530 -S539 0.052682520211902 P508 -A540 0.0514473524831374 S416 -Q519 0.0487021720219341 Q519 -A540 0.0483786153808241 L514 -A540 0.0475327156865641 I415 -R525 0.046218135311332 V528 -L534 0.0454213579274381 M522 -T527 0.0448358047926011 E409 -S416 0.043488613726633 S517 -E541 0.0428475044255396 P508 -I529 0.0426370663463076 I529 -E541 0.0398724206141239 P508 -A531 0.0391211355693786 N516 -I537 0.0380842821117826 Q519 -T536 0.0368330649335827 S416 -I530 0.0365955708032715 Q414 -V528 0.0364084136474554 L510 -L534 0.0353718884691121 P508 -I530 0.0351019539277173 Q420 -V528 0.0346612577591632 P508 -I537 0.0341481020608525 R515 -E535 0.0338010503384703 R525 -T536 0.0314583580214912 T512 -A531 0.0307115504784394 I530 -R538 0.0303340060500901 T527 -R533 0.0296360713160833 W417 -I530 0.026024102049401 A531 -R538 0.0234934906953912 R525 -E541 0.0217812726738842 P419 -I529 0.0212453582246965 N516 -G524 0.0203293342696242 G524 -A540 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