[Fri Aug 26 17:16:02 2016] >Input file: TMA1T0M5M1D.pdb >TM segments: 673-692 MAIDEN score = -0.6489 Below is the ranking list of the residue pairs and their related pseudo-energy (the lower, the better). This includes inter-chain residue pairs. The maximum (least favorable) pairwise energy value has been set to 10. See the MAIDEN software article: Postic,G., Ghouzam,Y. and Gelly,J.C. (2015) Biochimie, 115, 155–161. ----------- ---------------- Calpha pair Empirical energy ----------- ---------------- D680 -V688 0.896951436001518 W681 -V688 0.739632055049336 V683 -V688 0.395824232827578 R684 -L692 0.321218059615481 G679 -S685 0.257485660395067 D686 -Y691 0.225173514099479 V683 -Y691 0.162337090091006 V683 -A690 0.13149315906586 G679 -A690 0.115970294543938 D680 -T689 0.113151755217352 T682 -S687 0.109097227214651 G679 -V688 0.107231534349818 G679 -T689 0.100882290574441 Q678 -R684 0.0714282102466521 Q678 -Y691 0.0675164995063815 T682 -A690 0.0433892364906716 M677 -Y691 0.0424900506929964 Q678 -V688 0.0410412999599019 Q678 -T689 0.0379660123835508 Q678 -S687 0.0274101468774652 M677 -L692 0.0100198660243951 Q678 -V683 0.00772679804996362 Q678 -A690 0.00748272168744579 T682 -L692 0.00546003331572464 Q678 -L692 0.00507085762950332 G679 -Y691 -0.0180941929988023 G679 -D686 -0.0255793990841271 Q675 -D680 -0.0278263565377146 D680 -S685 -0.0290189251410771 N673 -Q678 -0.0300399900114776 D680 -S687 -0.0341215893816046 W681 -D686 -0.0366362496378818 D680 -Y691 -0.0543677912824299 S685 -Y691 -0.0591242760061302 R684 -Y691 -0.0635310361125314 D680 -A690 -0.064146539978835 T682 -Y691 -0.0757502281992899 W681 -T689 -0.079096670424523 W681 -S687 -0.104966647504422 D680 -D686 -0.105582106940735 W681 -Y691 -0.11295156043122 I674 -G679 -0.120819264277267 V683 -L692 -0.130524079580468 V683 -T689 -0.131040072446181 D680 -L692 -0.138776731842037 R684 -A690 -0.1456458656939 G679 -S687 -0.147150868547187 M677 -V688 -0.159665272761059 T682 -V688 -0.185406112907843 G679 -R684 -0.194637251934246 T682 -T689 -0.200514436191157 S685 -L692 -0.215542230994237 W681 -L692 -0.227326152366833 W681 -A690 -0.236949533862704 G679 -L692 -0.242421747948105 R684 -T689 -0.247926264441083 D686 -L692 -0.261476599936028 S687 -L692 -0.35241154305845 S685 -A690 -0.433284128981118