[Mon Aug 29 17:19:49 2016] >Input file: TMA1VJC9M1G.pdb >TM segments: 133-157_ 198-205 MAIDEN score = -0.3031 Below is the ranking list of the residue pairs and their related pseudo-energy (the lower, the better). This includes inter-chain residue pairs. The maximum (least favorable) pairwise energy value has been set to 10. See the MAIDEN software article: Postic,G., Ghouzam,Y. and Gelly,J.C. (2015) Biochimie, 115, 155–161. ----------- ---------------- Calpha pair Empirical energy ----------- ---------------- L133 -F140 0.450329498968195 E146 -D153 0.426060190293867 P147 -I152 0.37849578563977 L133 -A139 0.278654618948269 E146 -D154 0.271591317685781 E146 -S151 0.268172597680206 N144 -G150 0.246187165422952 G150 -Y155 0.222199263799022 L145 -S151 0.198194148943206 E146 -P157 0.191837087394547 V143 -L149 0.187882663986888 L145 -P157 0.174497950942947 P147 -P157 0.153061552903623 A139 -H201 0.150194076779278 N144 -D154 0.146235797652209 E146 -I152 0.141449710315556 V141 -V199 0.138186505778418 L145 -G150 0.125452985816583 G135 -A142 0.115324650081722 A142 -G150 0.114086044322004 P147 -A156 0.10977333801481 L133 -V203 0.100383068002261 A142 -V202 0.100210003144773 N144 -S151 0.0995565421191054 A142 -P147 0.0957510125260721 G135 -V141 0.0924388738515236 I152 -P157 0.0776780432670316 V141 -V202 0.0731327755790243 E146 -Y155 0.0728841737852006 V141 -V203 0.0677368068589299 L148 -D153 0.0534039676202758 N144 -Y155 0.0533658688106722 F140 -L145 0.0461280744077461 V141 -G150 0.0455951348155594 Q134 -A142 0.0434565164579335 L133 -H201 0.0327345855405263 V143 -V203 0.0325898490001215 S151 -A156 0.0258776124267595 V199 -T204 0.0230447208270368 L148 -A156 0.0188088279724319 L133 -V202 0.0172408204491736 N144 -L149 0.0165942758516735 A142 -L149 0.0152990685371872 A142 -L148 0.0133727591097657 L133 -R138 0.0113604906443421 L145 -D154 0.0101048772970431 Q134 -V143 0.00819448806927436 Q134 -A139 0.00305237277902215 L148 -Y155 -0.00087068206564922 L145 -A156 -0.000983561006096423 A142 -V203 -0.00771974843899925 V143 -I152 -0.0193009053779747 A142 -T204 -0.0215825303348685 L145 -D153 -0.025027631651102 A142 -S151 -0.0253825385183069 L133 -V143 -0.0323062018034923 L133 -A142 -0.0342826991718548 A139 -V199 -0.0355921274114381 E146 -A156 -0.0361365527194266 P147 -Y155 -0.0475931946297332 L148 -D154 -0.0486797365081975 S136 -V141 -0.0717677973723587 N144 -D153 -0.0729785044064188 F140 -V203 -0.0793288141555868 V141 -E146 -0.0816093081901053 Q134 -F140 -0.0925946696236268 V141 -L149 -0.109351656470369 R138 -V143 -0.11046345884514 F140 -V202 -0.130849234319028 F140 -V199 -0.131445722394686 A139 -H200 -0.159732608642281 Q134 -V141 -0.16026408800725 L149 -Y155 -0.168513199199296 V143 -G150 -0.169227898177165 S151 -P157 -0.170879852436208 R138 -H201 -0.172786481947861 R138 -V203 -0.172836706392355 R138 -V199 -0.175838778782598 F140 -H200 -0.178407855071513 G135 -F140 -0.183646840056624 R198 -V203 -0.184235230315299 L133 -V141 -0.208694501259868 F140 -H201 -0.215687733251324 R138 -H200 -0.217332957968265 L145 -Y155 -0.21887958278276 L145 -I152 -0.222009006954641 R138 -V202 -0.228006118304374 N144 -I152 -0.244557736232323 P147 -D153 -0.252602144444685 V143 -S151 -0.312094783768802 V143 -L148 -0.396991213084556 P147 -D154 -0.411891578306799