[Fri Aug 26 17:18:11 2016] >Input file: TMA1W454M2D.pdb >TM segments: 393-406_ 411-417_ 419-432 MAIDEN score = -3.8213 Below is the ranking list of the residue pairs and their related pseudo-energy (the lower, the better). This includes inter-chain residue pairs. The maximum (least favorable) pairwise energy value has been set to 10. See the MAIDEN software article: Postic,G., Ghouzam,Y. and Gelly,J.C. (2015) Biochimie, 115, 155–161. ----------- ---------------- Calpha pair Empirical energy ----------- ---------------- D397 -L429 0.894054140130089 D397 -V405 0.842943325802147 L396 -L401 0.695694222195824 P406 -H432 0.664127253614669 F415 -A422 0.617411377137148 R395 -L425 0.58521895261119 D397 -L425 0.558168273744835 V405 -H432 0.539675343268114 V405 -A411 0.528661496105828 R402 -L429 0.510389802002812 F415 -L425 0.457222343451958 D397 -H432 0.429572862768355 D397 -R426 0.350325930602153 R395 -L401 0.344027414745765 V405 -L429 0.342830592163199 E399 -P406 0.336470417793882 G417 -A422 0.32136518085249 A403 -A431 0.293308165650508 G394 -H432 0.2896905689461 C416 -A422 0.275695491463388 L396 -R402 0.268048007523672 G417 -A424 0.266182318516633 L396 -H432 0.253825917080688 G398 -A424 0.253459939167947 R395 -A431 0.24770653841054 G394 -F421 0.23180018016123 G394 -A427 0.226924643369364 D397 -A424 0.203268886086843 D393 -A424 0.202087085419832 G398 -D428 0.19423854606494 S423 -A431 0.189720436521461 G394 -P420 0.189684705666647 G398 -L429 0.188688827226532 D397 -A427 0.18449914358909 P420 -D428 0.177601401858207 R400 -P406 0.174422195613827 D397 -A430 0.171309078459624 P406 -R426 0.171175877137128 D393 -R400 0.17011754591319 D397 -L404 0.168505304236559 R395 -D428 0.160291403683829 E399 -R426 0.154396966193672 R395 -A422 0.153020447985871 D397 -V413 0.14525624819268 A411 -H432 0.14457620419967 W414 -R426 0.144313706235386 G417 -R426 0.136436465368017 V413 -A430 0.134514845686833 G398 -P406 0.132891467612336 D397 -D428 0.129463901289279 G394 -R426 0.126711280817901 R402 -A427 0.12430350826077 G394 -R402 0.122242637632055 S412 -A422 0.121087263686596 G398 -H432 0.112198362028717 S412 -A430 0.111453425813951 A403 -S412 0.107706384253096 R395 -R402 0.106415286686848 R395 -A430 0.104650134558341 L396 -L404 0.104031026735166 A403 -H432 0.103039853124542 D393 -L425 0.101685847677414 A422 -A430 0.0974091442874045 L396 -A431 0.0972898841968517 L401 -A430 0.0908152180893642 V405 -S412 0.0898150127981836 V405 -A431 0.0889518979334594 G398 -A431 0.0840551084416425 W414 -S423 0.0729957822418914 L396 -F421 0.0718229340462651 P406 -D428 0.0713527919020566 R426 -H432 0.0707998075716301 L396 -R426 0.0707080112143319 G394 -A422 0.0679927976996737 C416 -F421 0.0662581121870329 G394 -L401 0.0631523754912404 R400 -A431 0.057916150773452 R402 -V413 0.0573682778497742 V413 -H432 0.0560479731830315 E399 -L425 0.055775783982746 V405 -D428 0.0556367996388616 A424 -H432 0.0555894415040261 A403 -A411 0.0538427310750269 L404 -A431 0.0536509257967916 V405 -R426 0.0535528454509422 D393 -E399 0.0525233497104094 L396 -V405 0.0517409059279457 R402 -A424 0.0513376065230675 L396 -A427 0.0498548575135151 L396 -A403 0.048598453878391 V413 -A422 0.0482220782687346 A403 -A430 0.0461334357769266 D397 -W414 0.0440923148428429 L401 -A411 0.0432049615913108 V413 -S423 0.0430293673504631 A411 -L429 0.0421459356787057 G398 -A422 0.0383181042961724 L404 -S412 0.0374730674922452 R395 -V405 0.0370490657187486 G394 -S423 0.0345166752178956 D393 -G398 0.0338025690828165 E399 -V405 0.0336876951218681 V405 -A427 0.0316496876643857 V405 -F415 0.0292270280444746 D397 -S423 0.0286139557065649 S412 -L429 0.0283219685715328 E399 -L429 0.0263636061328718 D393 -S423 0.0256581736184192 R395 -F415 0.0228150258041735 R400 -D428 0.0199855666878612 V413 -A427 0.0185653441807103 R395 -P420 0.0181197413356626 I419 -A427 0.0166954966440365 D397 -S412 0.0147759952389501 L404 -L425 0.0135211129963384 G398 -R426 0.0132595373793035 R395 -R400 0.012614950568007 L404 -W414 0.0106991556590295 L396 -V413 0.0105265544463577 G398 -F415 0.00999908764674196 G398 -S423 0.00940469837769387 G394 -R400 0.00686679910581051 F415 -S423 0.00224258575087344 L401 -A431 0.00188262679467233 G394 -A431 0.000534358220782849 S423 -H432 0.000437860212491703 F421 -L429 9.24332517460158e-06 P406 -A427 -0.00268608207623866 L401 -R426 -0.00589469881574178 V413 -A424 -0.00671042173471292 R395 -S423 -0.0067759828266043 R402 -H432 -0.0077643877153486 A403 -V413 -0.00819136093881134 G394 -L429 -0.0106486346315786 C416 -L429 -0.0125912564649644 R395 -R426 -0.0127509244391106 V405 -A430 -0.0143773033922932 W414 -P420 -0.018068481293985 L396 -L429 -0.0194259884388042 R426 -A431 -0.0204470464669443 R402 -L425 -0.0214700924709934 F415 -P420 -0.0244821079554324 L404 -L429 -0.0249973193186481 L404 -V413 -0.0260185956428973 E399 -H432 -0.0272095997112012 G394 -A430 -0.0288349358092894 R402 -A431 -0.0305015107147482 L404 -A430 -0.0360435337976108 R402 -A411 -0.0363544183681519 L401 -A427 -0.0376632852786312 E399 -A430 -0.0419522812870654 C416 -A424 -0.0426351549262349 L401 -F415 -0.0433417721569338 D397 -A431 -0.0439366320012651 E399 -A424 -0.0457487810248112 P420 -L429 -0.046424908261498 L401 -L425 -0.0476070713513472 A403 -L429 -0.0486786971285591 D393 -P420 -0.0487150675407718 P406 -S412 -0.0496728464391317 I419 -D428 -0.0517669940533458 L396 -P406 -0.0562942472655852 R395 -A424 -0.0579881508005307 F415 -D428 -0.058925709814858 G398 -F421 -0.0610943134388564 E399 -A427 -0.0619380435517929 D397 -F415 -0.0623273271179523 L401 -S412 -0.0634366750724578 S412 -L425 -0.0661092014256379 R402 -R426 -0.0661802313805907 W414 -A430 -0.0670266868200563 P406 -W414 -0.0676544503902039 L404 -D428 -0.0696882907203804 W414 -A424 -0.0703668593723958 D393 -F421 -0.0708995699500106 D397 -A403 -0.0718563005822892 A424 -A431 -0.0735187614508348 A403 -D428 -0.0746713002258732 V405 -W414 -0.0751610521705306 A422 -A431 -0.0754192883747966 C416 -S423 -0.0768579632857875 L396 -A424 -0.0784733003102911 R402 -S412 -0.0793648789518953 R402 -D428 -0.0803607550487837 G398 -V405 -0.0819787840988115 S412 -R426 -0.0832398850716269 W414 -D428 -0.083825169741929 D397 -A422 -0.0851973173239004 S423 -D428 -0.0858360244559071 R395 -A403 -0.0869987339832159 P406 -L425 -0.0880408186274337 S412 -H432 -0.0883653908158162 F415 -L429 -0.0919439002960083 R400 -V405 -0.0921331017111955 R395 -F421 -0.0944376242867078 F415 -A427 -0.0959967517284626 E399 -D428 -0.0983865287844987 W414 -A427 -0.101075561368172 G398 -L425 -0.101734797758358 R395 -V413 -0.101993756960126 G398 -V413 -0.104289993175636 F421 -R426 -0.104404299719056 F421 -A427 -0.104463452817155 V413 -D428 -0.109946983432684 P406 -A430 -0.117923520398936 F415 -R426 -0.119020038041696 L425 -A430 -0.120647428707684 G394 -D428 -0.12139862313939 L396 -F415 -0.12334709029798 F415 -A430 -0.1264682705969 D393 -A427 -0.129445348382765 D397 -R402 -0.133799799832004 V413 -F421 -0.134679846201026 D397 -P406 -0.135451719147426 L404 -H432 -0.136598602834545 R395 -L404 -0.137917495903083 L396 -D428 -0.139127270556195 D397 -A411 -0.141552853438229 W414 -I419 -0.142187829600943 D397 -F421 -0.142756369045876 P420 -A427 -0.14500356689969 G417 -S423 -0.148786912276017 E399 -L404 -0.148927662793858 W414 -F421 -0.149713472859553 G417 -L425 -0.149737005871057 F421 -D428 -0.150106256377771 G398 -L404 -0.150317399008138 V413 -R426 -0.152281667119751 R400 -L429 -0.152656839672166 D393 -D428 -0.157247041028062 S423 -A430 -0.161142317827946 R400 -L425 -0.162670831582629 L396 -A430 -0.166149802144854 L396 -A422 -0.166221841961832 P406 -A431 -0.166291470829317 F421 -A430 -0.167290887106042 G398 -A430 -0.16911690765039 W414 -A422 -0.169668500780056 D393 -A422 -0.171915107229615 P406 -V413 -0.177437415224426 F415 -A424 -0.179853643359816 G398 -A427 -0.180561640334571 L401 -V413 -0.181746304614621 L396 -L425 -0.18739649495482 V405 -L425 -0.190959258884197 L404 -A411 -0.191066278870708 V413 -L425 -0.202144577971576 L401 -W414 -0.207705046998825 E399 -A431 -0.211665703406106 G394 -A424 -0.212377280233505 D397 -C416 -0.215442862861251 R402 -A430 -0.224724688184863 A422 -D428 -0.233880701928517 W414 -L429 -0.234631342315804 R395 -A427 -0.240517081565658 R400 -H432 -0.241932002406963 C416 -D428 -0.242552963956713 P406 -L429 -0.243593874298502 R395 -H432 -0.243739997171355 A424 -A430 -0.249606035185819 P420 -L425 -0.252641574281376 L401 -P406 -0.260346723580081 G394 -E399 -0.273713577357528 A422 -L429 -0.275023406721884 L425 -H432 -0.277240488082567 R395 -L429 -0.282479538480628 L425 -A431 -0.288481199044373 V405 -V413 -0.290681256540125 P406 -A411 -0.291704856456666 A424 -L429 -0.302927100719787 S423 -L429 -0.304937034576921 L401 -D428 -0.308628739638313 G394 -L425 -0.310824621068299 W414 -L425 -0.320393819895276 G398 -A403 -0.32813176054082 F415 -F421 -0.336522573801986 A422 -A427 -0.363805427532943 I419 -L425 -0.372756973287547 V413 -L429 -0.374887262436527 C416 -R426 -0.387995153990182 L401 -L429 -0.390655943281821 I419 -R426 -0.404716585066277 L401 -H432 -0.410697938008949 A427 -H432 -0.439423437169564 I419 -A424 -0.447178334129023 P420 -R426 -0.486348526982264 C416 -L425 -0.518904383842658