[Fri Aug 26 17:21:34 2016] >Input file: TMA2AF53M1D.pdb >TM segments: 85-105 MAIDEN score = -1.4379 Below is the ranking list of the residue pairs and their related pseudo-energy (the lower, the better). This includes inter-chain residue pairs. The maximum (least favorable) pairwise energy value has been set to 10. See the MAIDEN software article: Postic,G., Ghouzam,Y. and Gelly,J.C. (2015) Biochimie, 115, 155–161. ----------- ---------------- Calpha pair Empirical energy ----------- ---------------- I90 -L95 1.03288852383091 I90 -C102 0.246052488903835 L93 -E98 0.236599530696243 E98 -R104 0.231377813258604 E98 -D103 0.220847445516698 L92 -E98 0.212706392563413 L95 -V101 0.19803191235962 L94 -C102 0.182589346982357 H91 -M96 0.181988240521953 L93 -C102 0.158023771551319 L92 -F97 0.125467960847754 H91 -F97 0.0984431365064958 L95 -D103 0.0965633159286292 G89 -M96 0.0931002729704886 E98 -I105 0.0783745945528942 I90 -V101 0.0745182709178103 H91 -V99 0.0738222685889802 V88 -L95 0.0738031759589644 G89 -E98 0.0706752465756706 F97 -C102 0.0674667221611669 V88 -L93 0.0229307711550186 V99 -I105 0.0118408534867509 M96 -C102 0.00443756186839117 F97 -R104 -0.00518667869045153 L92 -C102 -0.0156371916126148 L93 -V99 -0.0229644550092161 L92 -V101 -0.0309260668760398 I90 -L100 -0.0367611096511258 V88 -L94 -0.0369607447489457 L92 -L100 -0.0385841264366693 M96 -D103 -0.0387817729679867 M96 -R104 -0.0413466985275202 I90 -V99 -0.0470893469433022 F97 -I105 -0.0477174243250911 G89 -F97 -0.0816967209580879 L95 -R104 -0.0821837181058105 V99 -R104 -0.101131087064306 H91 -E98 -0.105040826345208 L93 -V101 -0.121907962944305 L95 -L100 -0.125599463831275 L94 -D103 -0.138200270262008 H91 -V101 -0.150028033153454 L92 -V99 -0.16457489175092 I90 -E98 -0.184490852119151 G89 -L95 -0.195356721038664 L93 -L100 -0.204464686236753 I90 -F97 -0.211202965165443 L94 -V99 -0.214059095600284 G89 -L94 -0.241003033104103 L94 -V101 -0.243348135687564 H91 -L100 -0.257289063883593 L94 -L100 -0.265794543576755 F97 -D103 -0.279153701349511 M96 -V101 -0.329606244460866 L100 -I105 -0.355589775642826 I90 -M96 -0.358975913756572 L95 -C102 -0.45775092077763