[Mon Aug 29 17:25:58 2016] >Input file: TMA2Q3K0M1G.pdb >TM segments: 540-550 MAIDEN score = 0.3701 Below is the ranking list of the residue pairs and their related pseudo-energy (the lower, the better). This includes inter-chain residue pairs. The maximum (least favorable) pairwise energy value has been set to 10. See the MAIDEN software article: Postic,G., Ghouzam,Y. and Gelly,J.C. (2015) Biochimie, 115, 155–161. ----------- ---------------- Calpha pair Empirical energy ----------- ---------------- A541 -S546 0.271939546910111 L543 -L550 0.118633150637187 E545 -L550 0.0482447783939541 L543 -A549 0.0257209686800817 L543 -S548 0.0246216626043427 A541 -T547 0.0160618629558549 L540 -S546 -0.000829870218755288 D544 -L550 -0.0183968456754209 L542 -S548 -0.026313559492591 D544 -A549 -0.040938503356414 L542 -T547 -0.0486499819747328