[Fri Aug 26 17:30:13 2016] >Input file: TMA2V7T4S1D.pdb >TM segments: 468-479_ 637-671 MAIDEN score = -9.5046 Below is the ranking list of the residue pairs and their related pseudo-energy (the lower, the better). This includes inter-chain residue pairs. The maximum (least favorable) pairwise energy value has been set to 10. See the MAIDEN software article: Postic,G., Ghouzam,Y. and Gelly,J.C. (2015) Biochimie, 115, 155–161. ----------- ---------------- Calpha pair Empirical energy ----------- ---------------- P645 -A652 0.604709315410795 I646 -D651 0.524776203680112 I472 -R667 0.514470860682742 P473 -E669 0.496011271023677 P644 -A652 0.411524041687874 I646 -A652 0.391440745560568 A648 -A653 0.349930917180856 P645 -D651 0.327031429358194 P644 -V649 0.293917711432445 T643 -T661 0.293595616074559 D642 -V665 0.29063038142083 G656 -C662 0.283072384275151 T643 -D651 0.250863531311574 P644 -L664 0.244842683618224 P645 -T650 0.236694605579294 D642 -V649 0.235013257388167 G656 -L664 0.234045325571469 D642 -G656 0.232428399423295 V649 -I655 0.225102426647711 P644 -T650 0.223479098493158 Y469 -L663 0.202372851319432 P645 -N671 0.199678314334757 D651 -G656 0.1979493858816 R657 -C662 0.197618362607928 T643 -I655 0.193900014596875 I654 -C662 0.187207707771616 I646 -A666 0.183079383964121 A648 -G656 0.164322515545451 P473 -L478 0.161845775790102 D642 -A659 0.160950142937848 V468 -V665 0.158726497363226 I641 -G656 0.158528780348183 D642 -T661 0.153732110804203 D651 -Y658 0.153146088068 A648 -I654 0.149952970337625 A470 -R667 0.148820112483685 D651 -R657 0.145153568834857 I639 -I655 0.141185573548716 L638 -T661 0.137500760886867 D642 -A652 0.137322579104305 P645 -L663 0.13112478831933 P645 -R667 0.130044612879465 I472 -E669 0.129538170020585 I472 -L478 0.129301099320427 I646 -C662 0.128662662217889 P644 -D651 0.126347454730101 I474 -A666 0.124602983166021 L638 -A659 0.119675772556512 S475 -F668 0.116578975034637 A652 -G660 0.115940483346318 A652 -V665 0.115664305099723 D642 -R657 0.114247968621753 T650 -R657 0.113602231206004 I472 -L663 0.108739656658787 I654 -G660 0.106479850551112 Y469 -A666 0.106203608835205 T643 -A659 0.101184948988146 I646 -I655 0.100415090574186 A653 -G660 0.100252470600017 P644 -A659 0.0928338651506055 I654 -L663 0.0904729450065879 I639 -C662 0.0880603474898874 I639 -G656 0.087507726717531 R657 -L663 0.0825641147415133 I640 -A659 0.0786905525260639 P644 -G656 0.0771244925501327 V468 -R667 0.0768695801666102 I641 -G660 0.0749049691343409 S471 -L663 0.0737853010055942 A470 -C662 0.0734748616999306 P645 -V665 0.071829029101048 I646 -A659 0.069130053486028 L647 -L664 0.0672708849540449 A648 -L664 0.0663323101106057 I646 -A653 0.0656476236626267 P644 -V665 0.0625222857456436 T643 -R657 0.0625152486281741 L647 -I654 0.0616820574514358 I646 -N671 0.0598089633125909 P644 -I654 0.0586732986128173 I640 -A652 0.0583943357746008 L647 -I655 0.056185885383 I641 -R657 0.0558175185370946 I639 -L663 0.0485855317877153 P644 -A666 0.0470235426205967 A652 -A666 0.0465982941847929 S471 -L664 0.0460331101516056 I641 -I646 0.0459257484550228 I655 -L664 0.0426233705536099 I654 -T661 0.0413749387737194 I474 -V665 0.0396416735493417 V468 -L664 0.0394468528453569 T643 -A666 0.0371613419814221 V665 -K670 0.034487159033348 P473 -V665 0.0331045254416098 A659 -L664 0.0328297537976546 I640 -G656 0.0326391937454908 A470 -T661 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