[Mon Aug 29 17:31:16 2016] >Input file: TMA2VDV7M1G.pdb >TM segments: 262-273_ 353-371_ 468-479 MAIDEN score = 6.3397 Below is the ranking list of the residue pairs and their related pseudo-energy (the lower, the better). This includes inter-chain residue pairs. The maximum (least favorable) pairwise energy value has been set to 10. See the MAIDEN software article: Postic,G., Ghouzam,Y. and Gelly,J.C. (2015) Biochimie, 115, 155–161. ----------- ---------------- Calpha pair Empirical energy ----------- ---------------- P266 -K360 1.51801622252981 P266 -V359 1.45380932633879 P367 -T476 1.31079072371068 W267 -V359 1.05113631875304 P266 -K358 1.04262688075527 W267 -V362 0.727461508362256 G263 -V359 0.682403516999621 W267 -P361 0.681510405194235 F355 -K360 0.591418606620881 W265 -K358 0.525737238014534 W265 -K360 0.51562286728222 E264 -P361 0.490948705134129 W267 -K358 0.443585332418513 M369 -T476 0.407517715435687 P266 -N356 0.391194775335428 P266 -D357 0.387593072310668 Q268 -P361 0.367259677334717 L364 -T476 0.363022137296841 P367 -F478 0.362341453558476 C363 -F478 0.360149049562724 L364 -V475 0.330665361051125 G368 -T476 0.320425253894595 E264 -C363 0.28885373305822 Q268 -V359 0.286875157773592 G368 -N474 0.283581111578677 F355 -P361 0.259098453599454 C363 -T479 0.243899739011101 T354 -V359 0.229574997771254 C363 -G368 0.215374167943017 V269 -V359 0.204958594618521 P266 -C363 0.196637330023834 W265 -V359 0.196386073496878 S262 -P361 0.194706516609738 F355 -V362 0.185148102411689 C363 -T476 0.184047155820098 P365 -V475 0.181479428345706 L364 -T479 0.176826221726447 W267 -T354 0.176437599003869 P367 -V475 0.172099710489108 G263 -D357 0.165315079722564 P266 -V362 0.159133336524599 W265 -V362 0.158826632404815 E264 -K360 0.157911137534542 S262 -S270 0.156452550717926 W265 -N356 0.13469043180149 S262 -V269 0.134498254094817 S262 -N356 0.132443886645158 L371 -Y472 0.129199324424285 T354 -P361 0.125163863100237 W265 -S270 0.122873878265558 G263 -F355 0.119948366856783 L364 -V477 0.109245515522415 L371 -T476 0.107890461539462 P365 -Y472 0.106339582606881 S262 -W267 0.098636574330413 Q268 -L364 0.0980633871185022 S262 -K360 0.095069926314012 Q268 -K360 0.0915593068034984 G473 -T479 0.0913103602946397 L353 -K360 0.0886412788929936 Q268 -C363 0.0871646902422416 S270 -K358 0.0852128490744182 Y472 -T479 0.0784440728035443 V471 -T476 0.0697402146872648 C363 -V477 0.0672174482856116 Q268 -D357 0.0664609499305536 N366 -G473 0.0611272931659902 V269 -C363 0.054188083171093 E264 -V362 0.0524288981884515 Y472 -V477 0.0513079691610896 P365 -V477 0.050811882662829 W265 -P361 0.046108021107949 S270 -K360 0.0442644362027735 M370 -T476 0.04369327044748 Q268 -F355 0.0417513592401169 Q268 -T354 0.0409567152471636 S270 -V359 0.0356959349101387 V269 -F355 0.0309270845159526 M370 -T479 0.0296383023485953 G263 -T354 0.0265945240051924 E264 -V269 0.0259647733287091 L371 -V471 0.0259353583826472 D357 -V362 0.0251551467001718 G263 -P361 0.0198621079698702 G368 -V475 0.015032924586551 W265 -L364 0.0138786159806878 P365 -T479 0.013101478278184 N366 -N474 0.0123266873278485 V471 -V477 0.0121918407757349 L271 -V359 0.0120840846068533 P266 -L364 0.0082018015153551 M370 -F478 0.00770960219975025 W265 -F355 0.00550910473512745 V269 -V362 0.00396155608575888 S270 -P361 0.0022089730579431 P266 -L271 0.00116508523749737 L371 -G473 0.00100085567221164 N356 -P361 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-0.0561662259994467 T354 -V362 -0.0584138558650413 P365 -M370 -0.0586028641051874 E264 -K358 -0.0602016311434017 G368 -F478 -0.0638460279074611 S270 -V362 -0.0661126790139042 N366 -F478 -0.0669664835580412 E264 -N356 -0.069768750248011 P361 -V475 -0.0712124694112143 C363 -L371 -0.0801618088209164 V362 -V475 -0.0837818781564805 P266 -L353 -0.089751705995023 M370 -V477 -0.0902666229039251 L353 -V362 -0.0920443437128409 L371 -F478 -0.0956517275236868 G263 -N356 -0.0968768082522942 L364 -N474 -0.0975967202799426 P266 -T354 -0.103311526139805 S262 -D357 -0.108354286202169 V362 -N474 -0.108485592687536 E264 -D357 -0.115402981772616 W267 -V475 -0.117334135212161 E264 -F355 -0.121920274295671 P469 -N474 -0.122347996623085 L364 -F478 -0.123249945564688 W267 -L364 -0.124089132629053 M369 -V475 -0.127841764381601 N366 -T479 -0.128669310460118 L371 -V475 -0.133311318734085 G263 -K358 -0.139071279605578 N366 -V475 -0.139805535286141 M369 -F478 -0.140230456751635 W267 -L353 -0.143214046768158 V269 -T354 -0.147327694953002 N366 -T476 -0.148650291097967 C363 -V475 -0.149430240775044 C363 -M369 -0.152287261136617 V269 -D357 -0.153668779498085 N366 -V477 -0.153694890296314 G368 -V477 -0.162600344659505 G263 -V269 -0.162676169270498 Y472 -F478 -0.167638688067742 V269 -L353 -0.172050234569656 S262 -Q268 -0.175447094684476 M369 -N474 -0.176015044326169 L353 -K358 -0.182091297617624 L364 -M369 -0.193853513759613 C363 -M370 -0.19649160800851 N366 -L371 -0.19673929548203 Q268 -K358 -0.20244004126486 V269 -P361 -0.213213091126605 G368 -T479 -0.213658278625946 P266 -F355 -0.218990855119852 L353 -V359 -0.232061975594036 D357 -C363 -0.2445816656743 P365 -F478 -0.244917951123993 V269 -K360 -0.245171315907926 L371 -N474 -0.246886273654495 P365 -N474 -0.25205404261129 G263 -Q268 -0.256538739025901 M370 -N474 -0.263525052421258 G473 -F478 -0.266117645782077 G263 -K360 -0.273877114103468 E264 -V359 -0.287301821541439 P365 -T476 -0.294680310528158 C363 -N474 -0.295802028477267 S262 -K358 -0.301898960205144 P367 -T479 -0.321808612002686 M369 -V477 -0.324324217267285 S262 -V359 -0.358909537888718 W267 -F355 -0.379649799912038 P365 -L371 -0.441094363521112 W267 -C363 -0.443480977927787 L353 -P361 -0.464353734063355 P266 -P361 -0.682999411885565 W267 -K360 -0.751007918664184