[Mon Aug 29 17:33:01 2016] >Input file: TMA3D877M6G.pdb >TM segments: 406-427_ 510-546 MAIDEN score = -11.3878 Below is the ranking list of the residue pairs and their related pseudo-energy (the lower, the better). This includes inter-chain residue pairs. The maximum (least favorable) pairwise energy value has been set to 10. See the MAIDEN software article: Postic,G., Ghouzam,Y. and Gelly,J.C. (2015) Biochimie, 115, 155–161. ----------- ---------------- Calpha pair Empirical energy ----------- ---------------- L408 -K416 0.746226378241334 L420 -L533 0.684799367299 A422 -L427 0.619221789283178 T417 -V535 0.617699570657018 K416 -V535 0.544821086953192 Q517 -D537 0.518289767038951 S418 -L427 0.484493911678364 V515 -R520 0.423451921816965 L420 -V535 0.361665776985423 Q517 -P539 0.351356798486103 A524 -S532 0.333079292658879 L420 -F534 0.330419000024095 G512 -A541 0.328816565660283 A524 -Q529 0.303914737671346 A407 -S532 0.279064889483232 V409 -D537 0.273848618835696 A526 -S532 0.273588511356472 G410 -K416 0.268784035405741 R525 -K530 0.262714846352858 G516 -D537 0.258611429133241 S418 -L424 0.257518296689614 Q517 -S545 0.254919002659727 S510 -Q519 0.24517175803825 G516 -E538 0.240620154331315 S514 -P539 0.232715176632583 K416 -D537 0.22649251758678 P539 -Q546 0.206869937048286 Q529 -F534 0.201002928457655 G410 -P539 0.193434278734538 A407 -E538 0.190943033901667 N421 -F426 0.189641009951599 Q519 -A524 0.188179316862622 G410 -L419 0.185522160800264 S412 -N421 0.185314990782703 S412 -P539 0.182430064903437 N421 -L533 0.18220956314963 A518 -D537 0.179512605086098 T417 -D537 0.178436098828152 R525 -D537 0.17735752826018 G415 -L536 0.176908185179797 G528 -L533 0.171570340501193 E538 -L543 0.16869455324061 I521 -G528 0.163033521629048 G410 -L420 0.162367963617275 G512 -A522 0.161636831452177 G410 -V535 0.158655293896937 R520 -S532 0.157639722030476 L408 -S418 0.154306909088366 N421 -D537 0.153802354539454 T417 -L536 0.151823555889462 G425 -L533 0.146075327971669 R520 -Q529 0.143867354764964 L424 -L533 0.142200441516842 G415 -V535 0.142140414713352 N421 -L427 0.140701083686047 V515 -D537 0.139455469903941 Q517 -A522 0.138662657622485 V515 -S545 0.136510480653482 P539 -D544 0.132569111213754 K416 -L427 0.132485069909615 S418 -L536 0.131449763421823 T417 -G425 0.131230966610435 F426 -F534 0.131027275029717 A407 -D537 0.127553590719123 L406 -L536 0.126723264822144 A407 -A414 0.12594748750825 A422 -V535 0.125475101551292 G415 -L427 0.125253527268022 L408 -L423 0.125179275574925 N421 -S532 0.125055230671577 S532 -D537 0.123792665393896 G516 -T540 0.122275408383272 A422 -A531 0.12130087212932 P411 -L419 0.118907239576814 G410 -L536 0.115596362409354 V515 -A541 0.115543933410936 L420 -L536 0.115092404094302 L527 -L533 0.114223465286787 K416 -L424 0.113678102295688 N421 -A531 0.113430849651325 L420 -A524 0.112975844345281 V409 -P539 0.11154713336238 A518 -L527 0.111396612798135 S511 -G516 0.110774944222785 Q517 -S542 0.109378579401386 Q517 -S532 0.108843947100761 L523 -S532 0.108038351147652 G512 -T540 0.107813039885442 A518 -L533 0.107140600232331 S511 -A541 0.106618935089026 G413 -V535 0.103858736006874 L408 -A531 0.10306121963332 A522 -S532 0.102242305678883 R520 -E538 0.102034120080269 R525 -S532 0.101660207436601 L536 -L543 0.097885304281256 L513 -A541 0.0976958124686593 A422 -S532 0.0975883910579394 L424 -A524 0.0971049625889951 P411 -L536 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