[Fri Aug 26 17:47:51 2016] >Input file: TMA3KAJ3M6D.pdb >TM segments: 499-513 MAIDEN score = -3.3709 Below is the ranking list of the residue pairs and their related pseudo-energy (the lower, the better). This includes inter-chain residue pairs. The maximum (least favorable) pairwise energy value has been set to 10. See the MAIDEN software article: Postic,G., Ghouzam,Y. and Gelly,J.C. (2015) Biochimie, 115, 155–161. ----------- ---------------- Calpha pair Empirical energy ----------- ---------------- A505 -L510 0.284888244003288 V503 -E508 0.219959993413671 A501 -E509 0.192961844126308 A506 -A511 0.146957186082338 E500 -A505 0.14383380133737 E500 -E508 0.10792002099317 E500 -E509 0.0927448830840016 V503 -V512 0.0672017745656479 A501 -A511 0.0612774933271261 A505 -G513 0.0574985243742514 L507 -G513 0.0450647677463998 S499 -L507 0.0290115893079048 Q504 -A511 0.0165847846741607 V503 -G513 0.0143512831657011 S499 -E508 -0.00825619560588658 I502 -A511 -0.0177906293774774 L507 -V512 -0.0281480975241557 Q504 -G513 -0.0282044441446087 A505 -V512 -0.0285194414352814 A506 -G513 -0.0324042598258023 Q504 -V512 -0.0448975934689295 S499 -Q504 -0.0909387798558303 I502 -L510 -0.0929547195013455 S499 -A506 -0.110202754309158 E508 -G513 -0.124527632222949 A501 -L510 -0.125724887699241 E500 -A506 -0.150613836155746 I502 -E509 -0.150989988326178 V503 -L510 -0.165008894907465 A501 -L507 -0.168514424237374 E500 -L507 -0.188685646468474 I502 -E508 -0.193819583768928 S499 -A505 -0.197107085953949 A501 -E508 -0.243717396086143 A505 -A511 -0.247155761465942 A506 -V512 -0.250430002518664 Q504 -E509 -0.287582142401945 V503 -A511 -0.317829797801739 V503 -E509 -0.320806466239057 A501 -A506 -0.344396548109063 I502 -L507 -0.375455264999648 Q504 -L510 -0.516516437339078