[Fri Aug 26 17:49:14 2016] >Input file: TMA3KIF5M1D.pdb >TM segments: 394-411_ 442-456 MAIDEN score = -11.2034 Below is the ranking list of the residue pairs and their related pseudo-energy (the lower, the better). This includes inter-chain residue pairs. The maximum (least favorable) pairwise energy value has been set to 10. See the MAIDEN software article: Postic,G., Ghouzam,Y. and Gelly,J.C. (2015) Biochimie, 115, 155–161. ----------- ---------------- Calpha pair Empirical energy ----------- ---------------- F399 -F451 0.996100243575878 F399 -A454 0.651482105856827 L405 -P410 0.626925493573897 G402 -F451 0.613190243989783 F399 -V455 0.612035364951336 I400 -V455 0.567968722410876 L403 -F452 0.527924145114815 L403 -F451 0.43275873550223 F399 -F452 0.374882041420648 L403 -G448 0.369011738410226 L405 -G448 0.28481377977783 G404 -A409 0.238057249462948 A395 -G401 0.226288452279089 G404 -F452 0.212268730531122 I400 -G448 0.211291253340327 I400 -F451 0.204827132064537 P410 -G443 0.193761206648136 L396 -V455 0.184915662600023 L403 -V455 0.176012550746031 G443 -A453 0.161965989402796 G406 -T449 0.154272451034609 L407 -G448 0.146417868065077 G402 -L407 0.145992207143657 G404 -L447 0.140559023453887 A408 -F451 0.137712309471391 A408 -T449 0.135340643428307 L398 -G448 0.13497384180748 A445 -A453 0.129663557310799 G401 -F452 0.126235350838714 G402 -P410 0.121064926352916 P410 -A445 0.12084829553145 G397 -G406 0.116627511310581 L398 -L447 0.114665316286822 G401 -G448 0.113393366496796 V411 -G443 0.11016883631909 G402 -V446 0.106123815886843 G397 -G404 0.104516017625782 F399 -T449 0.0986519879582737 G404 -A445 0.0983222249231748 L405 -I444 0.0974100922983556 G402 -T449 0.0928451861761963 I444 -T449 0.0925237376994179 L407 -V446 0.0915497838597754 I400 -T449 0.0898130759377702 L407 -V455 0.0873829742843504 G401 -L407 0.0834275982856777 V411 -I444 0.0829199881315201 G404 -A453 0.0826623331260703 L405 -F452 0.081701161488489 G406 -V446 0.080650845996507 I400 -A454 0.0782605524564897 L396 -F452 0.0763915166413216 L405 -I450 0.0741193674456437 G401 -A454 0.0731409862956198 G401 -I450 0.0718349796602142 A408 -A445 0.0717660168702121 A409 -I444 0.0711748199435602 A408 -I444 0.07040511022569 L396 -A453 0.0659273227294205 G397 -L405 0.0650591853472622 I400 -L447 0.0641306268475585 L407 -A454 0.0630648607039292 G406 -G443 0.0623479814299994 L407 -A453 0.0600912863411209 G397 -F451 0.0599652334178451 L407 -G443 0.0594635626246609 L403 -A408 0.0579414014508619 P410 -G448 0.0561485676653151 L394 -G401 0.0557433722618186 G397 -V455 0.0540166321107591 G397 -T456 0.0527523464117694 L396 -L403 0.0486891504409659 A395 -A454 0.0484878311239309 L403 -L447 0.0479409439837059 I400 -A453 0.0450900954483962 I442 -T449 0.0448794140232707 L407 -F451 0.0390773349569669 G406 -A454 0.0371572941499276 L405 -L447 0.0356454964300399 A408 -V446 0.0337021563897917 L394 -A454 0.0330076478306154 L407 -I444 0.0328753474204406 G402 -I444 0.0281797669597719 L403 -A453 0.0263862244317767 L403 -G443 0.0257695302552066 L396 -L405 0.0209584619748444 F399 -A408 0.0205652807546275 V411 -A445 0.0195654295410073 A409 -F451 0.0193894101932379 A445 -A454 0.0193391285646891 A408 -V455 0.0146948929322877 G401 -A453 0.00966211974684139 I400 -L405 0.00935799858591402 G404 -A454 0.00848517174107699 L398 -A453 0.00808143319118582 G402 -A445 0.00770724802998424 L407 -I442 0.00746484660576296 G397 -A453 0.0053862625203136 L398 -A408 0.0021511907648053 G401 -T449 0.000972544489743044 L405 -T449 0.000133017861175366 I400 -A409 -0.000815161587957913 P410 -F451 -0.00117426905976326 I400 -P410 -0.00410195395514368 I442 -L447 -0.00552364689608931 A395 -G402 -0.00691908817903553 A409 -A445 -0.00708725895597961 G406 -I450 -0.0078195285523559 V446 -A454 -0.00900970517763477 L405 -V411 -0.00975832234690799 F399 -A453 -0.0102737567576359 G402 -A453 -0.0129948828599193 F399 -L447 -0.0154940207944909 L403 -A445 -0.0163705298843606 L398 -V455 -0.018445860409491 G401 -A409 -0.018801126542507 A408 -F452 -0.0194335570260522 G406 -A445 -0.0197060021304016 A395 -V455 -0.0201754757717518 A409 -L447 -0.0212540150985436 A409 -G448 -0.0218312763563671 F399 -I450 -0.0227506021834269 A408 -L447 -0.0227718790239075 G404 -T449 -0.0249778242840879 G401 -L447 -0.0251769295312396 G397 -L407 -0.0261678397373464 G404 -I450 -0.0278442751602253 V411 -V446 -0.0322894271505483 G406 -F452 -0.0344621097688167 L398 -A454 -0.0357245650363507 L398 -T456 -0.0367984734796067 P410 -V446 -0.042206351119952 V446 -V455 -0.043426952328126 I442 -I450 -0.0440365522554274 L403 -T456 -0.0460676600545238 L396 -I450 -0.0470028306694905 F399 -T456 -0.0474202194660542 G401 -T456 -0.0495126331996723 G402 -T456 -0.0502784404688068 A395 -I400 -0.0518789334656837 L403 -I444 -0.0519382823231567 G397 -F452 -0.0521082737693306 G448 -T456 -0.0528036700410401 G443 -F451 -0.0569698939134076 L447 -V455 -0.0584537043042079 G406 -I442 -0.0589338744534724 I444 -F452 -0.0598022739892331 I444 -A453 -0.0639034564982657 G401 -P410 -0.0664073057001273 V411 -T449 -0.069753592473905 P410 -I442 -0.0716514869744107 A395 -T456 -0.0826527167024074 L407 -I450 -0.0858946356874614 G401 -V411 -0.0859329516265945 L398 -F452 -0.0882257883787565 I400 -F452 -0.0916220657560216 G402 -V411 -0.0918128040295292 L398 -I450 -0.0929218663751526 L398 -T449 -0.0960692448048023 G397 -A454 -0.0962441099364283 G406 -V455 -0.0982835418493888 G402 -A454 -0.103873827775756 L394 -G402 -0.104544253256173 G397 -I450 -0.106374962603799 L396 -G404 -0.108258044517862 L405 -V455 -0.11077735196473 P410 -L447 -0.11169716878176 L394 -F399 -0.11345036457716 G406 -F451 -0.115907417820508 L398 -G406 -0.116862960995519 G404 -I444 -0.121631295855163 G404 -F451 -0.121634135092403 G406 -V411 -0.122111680386785 G404 -V455 -0.126727652448573 G443 -F452 -0.128213355115547 I450 -T456 -0.131597338478842 A445 -F452 -0.132082759539572 V411 -I442 -0.135389012705639 L407 -A445 -0.136968784436512 L403 -V446 -0.139842076701825 L405 -F451 -0.140129005647647 F399 -V446 -0.14135123964859 V411 -F451 -0.141382302941831 G401 -V455 -0.142257733308604 T449 -T456 -0.144617742728734 V411 -G448 -0.145327424854582 G443 -T449 -0.145601051504743 G448 -V455 -0.146096394467508 A445 -F451 -0.146949473374621 F451 -T456 -0.151693864691696 A408 -I450 -0.152204147342664 F399 -G448 -0.153174182186011 G402 -V455 -0.153503464221844 G406 -L447 -0.153811462693693 G401 -F451 -0.154611557464002 V446 -F452 -0.154654080998951 L396 -F451 -0.154697288840084 L403 -V411 -0.167624981952237 L398 -F451 -0.168256465315141 F399 -A409 -0.170043922067241 L398 -L407 -0.170146468071074 I444 -F451 -0.170915754695373 G404 -G448 -0.173765105159486 L396 -G402 -0.17553976973428 F399 -G406 -0.177108465311357 G402 -F452 -0.180753570997927 F399 -L407 -0.181214996441327 I400 -A408 -0.183096575097608 L403 -A454 -0.184960822345955 G404 -V411 -0.186549763764403 L396 -G401 -0.188692776834618 G406 -I444 -0.189471493262338 G402 -G448 -0.190092753032957 L407 -F452 -0.190390265816852 I442 -G448 -0.194149477641998 A408 -G448 -0.19716979396849 G397 -L403 -0.197288548396992 G401 -G406 -0.197511565169146 T449 -V455 -0.204068872623421 I400 -G406 -0.213214191950608 L407 -T449 -0.216710815927117 V446 -F451 -0.21959564705152 I400 -I450 -0.220818789818799 V411 -L447 -0.222381734966563 L394 -T456 -0.225228252307724 G406 -G448 -0.236202848637522 G443 -I450 -0.247622973753467 L396 -T456 -0.250157017566594 G448 -A454 -0.253228925704251 G401 -A408 -0.254417674463877 A445 -I450 -0.254488362937025 G397 -G402 -0.255185036335593 P410 -I444 -0.255247326337889 L407 -L447 -0.25541503695163 T449 -A454 -0.256290192042872 G404 -P410 -0.256389938244816 I400 -T456 -0.26249520257399 F399 -L405 -0.263288562205178 F399 -G404 -0.26597692358026 G402 -A409 -0.270156871638409 L403 -A409 -0.270943948272663 L447 -A454 -0.27465993375258 L394 -V455 -0.282055971425217 G402 -I450 -0.289930733179133 I444 -I450 -0.290576819189639 L403 -T449 -0.299362072452963 L447 -A453 -0.300117581280115 L396 -A454 -0.302440246694862 L398 -G404 -0.321368594385413 L447 -F452 -0.326384275608151 L398 -L403 -0.339647879780399 V446 -A453 -0.343775531570771 G402 -L447 -0.348117554351552 L398 -L405 -0.367111074910088 G443 -G448 -0.410145184552755 I400 -L407 -0.410381346436345 L403 -I450 -0.416996472990701 L394 -I400 -0.417708382696829 G402 -A408 -0.436009511012497 G448 -A453 -0.450380010458131 I450 -V455 -0.452273354203085 L403 -P410 -0.568989781886034