[Fri Aug 26 17:55:29 2016] >Input file: TMA3S029S1D.pdb >TM segments: 400-418_ 455-472 MAIDEN score = -15.3264 Below is the ranking list of the residue pairs and their related pseudo-energy (the lower, the better). This includes inter-chain residue pairs. The maximum (least favorable) pairwise energy value has been set to 10. See the MAIDEN software article: Postic,G., Ghouzam,Y. and Gelly,J.C. (2015) Biochimie, 115, 155–161. ----------- ---------------- Calpha pair Empirical energy ----------- ---------------- I413 -A459 0.629853808261169 F418 -A456 0.509330233234977 K460 -L465 0.492685020916635 T401 -E408 0.432745052799247 S403 -V470 0.419891785963089 E414 -K463 0.393253778779699 E408 -K463 0.381920234141361 E408 -G467 0.334680521943214 I413 -A456 0.29989805561964 S407 -I466 0.280056369839061 G411 -G467 0.241218695305825 T410 -L465 0.23634121661527 T410 -E464 0.222867600884014 S403 -A471 0.221846578932532 G404 -S469 0.216096391209295 I413 -S455 0.214806944218044 G411 -A458 0.210331946195037 S403 -I466 0.209070388839431 T410 -I462 0.194262871199401 A456 -E464 0.182505358672401 S400 -V470 0.180814139806129 F418 -K460 0.174906366724887 I413 -A457 0.167770691431874 K463 -A471 0.15850346423351 G415 -K460 0.156713237246934 E414 -A457 0.156198203094848 E414 -A458 0.155483234132494 A456 -E461 0.154949182927952 T410 -K463 0.147358892580625 I406 -K463 0.142731285031448 E408 -K460 0.141727891530735 I409 -A456 0.139922699720193 A459 -E464 0.139897505074924 G411 -E464 0.139799115880635 E414 -E464 0.133279910442843 T401 -T410 0.133109643621374 K460 -S469 0.133003644506407 E461 -I466 0.129820268206402 E464 -S469 0.128962371300702 T401 -I409 0.127328616454003 S403 -I462 0.126442887728673 K405 -G467 0.125826061586121 S407 -A417 0.121362397886244 S403 -A459 0.120507074251622 S455 -K463 0.117113736985527 I413 -I462 0.116896060608179 S402 -T410 0.115293296526067 A459 -S469 0.113257664043178 E414 -S455 0.113079476976167 I406 -A459 0.112804205296107 E408 -E461 0.112676809017199 S407 -A457 0.112511888357976 S402 -S468 0.111480408745201 E408 -E464 0.110963908792292 I409 -K460 0.109071039140363 I406 -E464 0.1074340330876 L465 -V472 0.107414647530533 I409 -G467 0.106478885133339 G415 -A458 0.104965985707699 T410 -V470 0.10345178997593 T410 -G467 0.101065342413224 T401 -G467 0.0993741748891935 I416 -S455 0.0986693140190349 K460 -I466 0.0980773885590818 S402 -G467 0.0951652281387405 S407 -A458 0.0940279735928891 E414 -A459 0.0937227161352148 S402 -I409 0.0918736382544663 G404 -S468 0.0875082817119837 I409 -G415 0.0862356178264463 I406 -I416 0.0842597078913996 L412 -A458 0.0823522296669468 I413 -E461 0.0821679763778556 G404 -E464 0.0793930200782031 G411 -S455 0.0790926136754608 S407 -G415 0.0789696338848422 S400 -K463 0.0788290600015271 L412 -K460 0.0787186666387392 G411 -A457 0.0752019642181327 A456 -I466 0.0679178810344472 T401 -S468 0.0629605715551258 S400 -S468 0.060559067529695 S407 -S469 0.0545791884239426 A459 -G467 0.054336629900865 K405 -V470 0.0542946622138363 G415 -A457 0.0530346367798842 G411 -E461 0.0528575069139237 A458 -G467 0.0492710604022526 G404 -L465 0.0462781682141649 G411 -I466 0.0456370284369587 S407 -S468 0.0447765507484261 I409 -I462 0.044174483406854 K460 -S468 0.0429844557102061 S403 -V472 0.042436906047524 L412 -S455 0.0423663631570255 I409 -A458 0.0414449401630836 S403 -G411 0.0398762508084218 T401 -K463 0.0360750895348465 T401 -V470 0.0351716849644772 G404 -V470 0.0351159171085289 A458 -K463 0.033699903121482 S402 -K463 0.0298421788745973 K405 -S469 0.021998763399762 S407 -I462 0.0212459662136268 I466 -A471 0.0209498276132596 E464 -V472 0.0165293123239525 L412 -I466 0.0163080505172486 F418 -S455 0.0146282466498707 T410 -S455 0.0140856898355883 G404 -I462 0.0120834021825882 E408 -I416 0.0109025144771286 K460 -G467 0.00971843002907979 A457 -K463 0.00837514231845049 K463 -S468 0.00779395777948722 K405 -K463 0.00705498234711754 K405 -G411 0.00640053082476211 S407 -E464 0.00566760618995241 S403 -T410 0.0026464921261331 S400 -A471 0.00147042889317861 S403 -K463 0.00115241870235794 S403 -E408 0.000735179300830446 G404 -L412 -0.00015237368320431 G415 -K463 -0.00025382222586412 S402 -I466 -0.00278270220199595 A458 -I466 -0.00377386187888584 G467 -V472 -0.0059981967217535 T401 -V472 -0.00610444541174271 S403 -L412 -0.0066915518083408 G404 -E414 -0.00919572016867498 L412 -I462 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-0.411127126160989 I416 -A456 -0.41328044838574 A417 -A456 -0.457741856346073