[Mon Aug 29 17:50:46 2016] >Input file: TMA3SU03M1G.pdb >TM segments: 302-313_ 320-334_ 353-374 MAIDEN score = 2.7759 Below is the ranking list of the residue pairs and their related pseudo-energy (the lower, the better). This includes inter-chain residue pairs. The maximum (least favorable) pairwise energy value has been set to 10. See the MAIDEN software article: Postic,G., Ghouzam,Y. and Gelly,J.C. (2015) Biochimie, 115, 155–161. ----------- ---------------- Calpha pair Empirical energy ----------- ---------------- F308 -V333 10 F308 -W329 0.943123733791242 A306 -P334 0.913546093060503 L307 -T332 0.830113321101269 T302 -L307 0.822704295875251 L320 -M325 0.760981433609722 L307 -V333 0.736085174591648 L320 -M374 0.72673689663815 A331 -W369 0.708555336800609 L328 -L370 0.691946922589501 I304 -V333 0.648505409773419 L307 -P334 0.630180580530573 A327 -R373 0.625840418049869 A331 -M366 0.598748150737089 F308 -P334 0.585063204092767 F308 -T332 0.555518395706946 T332 -M366 0.541970144373731 L328 -V333 0.538229809625012 L328 -M374 0.53505218423026 F308 -L328 0.518652690044355 A306 -V333 0.511039901177444 I304 -G363 0.452369938254079 I304 -P334 0.448135278829686 A331 -L370 0.380489831379357 M325 -W369 0.375458999941352 L328 -R373 0.350447562280684 I304 -M366 0.320614295951188 A305 -G363 0.313175240140801 I309 -V333 0.302445460485643 L320 -R373 0.294160575178607 L320 -G372 0.286030664194925 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