[Mon Aug 29 17:51:49 2016] >Input file: TMA3TUN3M1G.pdb >TM segments: 381-400_ 489-531 MAIDEN score = -13.9624 Below is the ranking list of the residue pairs and their related pseudo-energy (the lower, the better). This includes inter-chain residue pairs. The maximum (least favorable) pairwise energy value has been set to 10. See the MAIDEN software article: Postic,G., Ghouzam,Y. and Gelly,J.C. (2015) Biochimie, 115, 155–161. ----------- ---------------- Calpha pair Empirical energy ----------- ---------------- L383 -K391 0.999375557576522 F395 -D513 0.552729401913191 F395 -L511 0.552316083274874 A502 -T507 0.450860251373701 K391 -E514 0.392527443966699 T516 -E522 0.387378769402892 A515 -K525 0.35130001290298 A518 -K525 0.345348794923928 A502 -L510 0.339818023793005 A399 -L511 0.324424565984508 Q495 -E524 0.317797616154178 E514 -Q528 0.305413383480269 T381 -P508 0.2930208888237 G385 -K391 0.286847044600323 S392 -A515 0.279552511639972 G491 -E524 0.278347035796012 K391 -A515 0.274242419087009 Q495 -E514 0.261278426589986 Q493 -Q528 0.260781939974575 E522 -V527 0.25963907242489 Q495 -S523 0.251617095529542 D520 -D529 0.247896514028173 F395 -L512 0.243214335259031 T393 -L511 0.231007751820119 T381 -L512 0.212872526254072 S517 -V527 0.208863121208617 A386 -S517 0.208538163295006 S490 -A518 0.192074510346254 S490 -S517 0.19182094120919 G385 -T393 0.189208455706423 V384 -S392 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