[Mon Aug 29 18:03:16 2016] >Input file: TMA3WVD7M4G.pdb >TM segments: 386-398_ 505-518 MAIDEN score = -6.2136 Below is the ranking list of the residue pairs and their related pseudo-energy (the lower, the better). This includes inter-chain residue pairs. The maximum (least favorable) pairwise energy value has been set to 10. See the MAIDEN software article: Postic,G., Ghouzam,Y. and Gelly,J.C. (2015) Biochimie, 115, 155–161. ----------- ---------------- Calpha pair Empirical energy ----------- ---------------- L394 -D512 0.819934587806449 L394 -L510 0.511265777370423 L398 -L510 0.358571771644774 G387 -V393 0.217698610545141 K390 -L398 0.181810599315608 L397 -P507 0.159701244506913 V393 -D512 0.150991266690589 G388 -L394 0.14336412515442 S386 -V393 0.137533294258949 G387 -L394 0.129110221324101 S386 -A395 0.11648159161722 L398 -P507 0.103079322587932 L397 -D512 0.102574342009836 L397 -A506 0.0929257975904667 L398 -A506 0.0871867290775956 D505 -L510 0.0863980148427972 L396 -L511 0.0845193624505707 A506 -L511 0.0805273287621757 L394 -A514 0.0765478545095553 L511 -A516 0.0754642081809802 L394 -P507 0.073789637651561 L510 -A516 0.0594023036889073 L396 -I509 0.0566871201076773 S386 -D512 0.0509582589514436 D512 -A517 0.0476569371837776 L397 -I508 0.0451066202668358 L394 -L511 0.03667267664457 G388 -A395 0.0342546389982976 G389 -L397 0.028044261300324 V393 -I509 0.0276760742116582 G389 -E513 0.0205956987376796 L396 -D512 0.0197822084526733 S391 -A514 0.0166749176703531 L510 -T515 0.0131099439746283 A395 -I509 0.00509045480887371 L394 -E513 0.00304064555611383 T392 -E513 0.000726262272310763 G389 -L510 0.000428998447270401 G389 -L511 -0.00622775895708383 T392 -L511 -0.0153696783655652 S386 -T392 -0.0167540429348279 L398 -I509 -0.0191747483252751 A395 -E513 -0.0208457314713053 K390 -L510 -0.0250787844466469 L397 -L511 -0.025736054831684 V393 -I508 -0.0287743384039878 S391 -T515 -0.0291918749726205 G388 -E513 -0.0326316598479268 A395 -I508 -0.0346231185734736 G387 -E513 -0.0374165884895188 V393 -L511 -0.0425707824310697 A395 -A514 -0.0444055018388543 S386 -E513 -0.0477085729778222 I509 -A514 -0.0583353804870264 G387 -A395 -0.0607885809705269 G387 -T392 -0.0615673982302956 G389 -D512 -0.0647704067658541 G388 -L396 -0.0666547034030707 L398 -D512 -0.0704347803237386 S386 -A516 -0.0760920212913891 L394 -I508 -0.0779310497151833 S391 -E513 -0.079316596270735 S391 -I509 -0.0807737886305903 K390 -E513 -0.0856881417654392 D512 -L518 -0.0887613835700474 S391 -L511 -0.089889982021603 S386 -L394 -0.0923262855928013 L511 -A517 -0.0923805100560537 G387 -D512 -0.0956979095570087 T392 -L510 -0.0973812988186937 G389 -L398 -0.104845771702944 K390 -A395 -0.105270939741622 S391 -D512 -0.110766442255819 S391 -A516 -0.110853635806202 L396 -I508 -0.113180039877239 K390 -A514 -0.129962267526708 L396 -L510 -0.138057999026682 G388 -D512 -0.139020321897277 K390 -D512 -0.146522590801977 V393 -E513 -0.149177321573833 L398 -E513 -0.151299333271605 A395 -L510 -0.169248545657362 G389 -L396 -0.17114084874355 K390 -L397 -0.171715309032566 T392 -L397 -0.173918312121492 L398 -D505 -0.175871850446628 D505 -L511 -0.178522104061856 A395 -L511 -0.18321399677933 A395 -D512 -0.184497460604628 G388 -V393 -0.186691056464065 E513 -L518 -0.189460852677412 S391 -L398 -0.194369993500794 S391 -L510 -0.19520503036269 K390 -L511 -0.20166632161435 K390 -L396 -0.216607865734588 G389 -A395 -0.220152503631376 T392 -D512 -0.226328086943566 S391 -L396 -0.258187501251077 T392 -L398 -0.265177485849895 V393 -L510 -0.292761569874185 L397 -L510 -0.294953886912722 L398 -I508 -0.303960336485211 S391 -L397 -0.326428305581542 L394 -I509 -0.342982897139239 G389 -L394 -0.398071519047594 L397 -I509 -0.417146719261209 L398 -L511 -0.421939002377432 V393 -L398 -0.441137891079502 S386 -S391 -0.503374129691315