[Mon Aug 29 18:06:37 2016] >Input file: TMA3X4M8M7G.pdb >TM segments: 414-456_ 529-558 MAIDEN score = 4.2689 Below is the ranking list of the residue pairs and their related pseudo-energy (the lower, the better). This includes inter-chain residue pairs. The maximum (least favorable) pairwise energy value has been set to 10. See the MAIDEN software article: Postic,G., Ghouzam,Y. and Gelly,J.C. (2015) Biochimie, 115, 155–161. ----------- ---------------- Calpha pair Empirical energy ----------- ---------------- D438 -E443 10 D438 -V446 0.994512235266878 V541 -D553 0.889362150473461 D438 -L447 0.867422924224761 F437 -V452 0.849641864345243 F437 -V446 0.754924183589622 L426 -L435 0.724177322262138 L540 -D553 0.650821173794101 L436 -V446 0.643843544870407 V430 -L435 0.61491177627493 F437 -I445 0.608921821276182 R550 -I555 0.572649240692285 L435 -N444 0.508221576427717 A543 -T548 0.504028587072735 F437 -R442 0.501158193491688 L530 -R537 0.486665089578238 A543 -V549 0.484155832665623 L447 -V452 0.460434333893688 T431 -E443 0.448345159716359 L530 -A552 0.435939418826053 F437 -L447 0.430377728294629 R550 -I556 0.389063237428555 E433 -K450 0.388775021074415 E433 -T440 0.385436691153093 R424 -L435 0.384430719094278 L436 -R442 0.379753668552057 L426 -E443 0.331669112905297 V430 -D438 0.326904440388525 V541 -V549 0.326074362321069 V430 -E439 0.325809494771523 S547 -K554 0.318918741032879 S532 -K554 0.315083844213882 L530 -T539 0.312420134009007 G434 -R449 0.30858168234118 L426 -E439 0.306986751691751 L436 -R449 0.297142334770056 G448 -E455 0.297001564375967 V446 -V452 0.292342334578676 G434 -L447 0.290316386238159 Q432 -E455 0.283852547459114 F437 -G448 0.280507702136016 N444 -E455 0.268154839733187 R449 -E455 0.255337235821498 L436 -V452 0.254028935806134 G448 -D454 0.248727504723508 S428 -G434 0.247858215189651 T420 -T539 0.246806285749817 G425 -E439 0.241562178915705 L441 -G448 0.241369182812426 R537 -K554 0.23492335833607 Q432 -E443 0.228661089876721 E443 -N451 0.228659442658335 D417 -R537 0.216188742468075 V446 -S453 0.209429777162361 V549 -M558 0.207462491420215 E421 -N444 0.201700128388499 D438 -G448 0.200527651612277 R449 -D456 0.196581608425825 D531 -V549 0.194099794549309 R545 -A552 0.191151123796719 E433 -V452 0.19049105116491 T420 -I542 0.188678765844325 D531 -T548 0.188476661762693 G434 -N451 0.187099223356462 E439 -K450 0.180511212246168 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0.119306635637611 R442 -L447 0.118579586466598 R442 -G448 0.114136503930971 D531 -R550 0.114083224639634 G535 -K554 0.113746371251682 A416 -D422 0.113627413950778 L423 -L435 0.112498595681752 Q432 -R449 0.110757291481592 L423 -S428 0.110632476628856 E433 -D438 0.109274064284443 A534 -D553 0.108942085758601 L546 -M558 0.107902289484223 T440 -G448 0.107429097645729 A529 -N551 0.107172988905961 L435 -L441 0.103237649023351 D422 -E443 0.102954273466241 D531 -L540 0.102510783233564 L441 -L447 0.102312732508974 K450 -E455 0.102198369473725 V541 -L546 0.102113960136118 T420 -N444 0.101631841748516 L530 -I542 0.099482274518353 V541 -S547 0.0988576843184878 T431 -R449 0.0988269663305121 S428 -E443 0.0987327449981796 L546 -K554 0.0983856050779734 A543 -V557 0.0982318737044867 V415 -T539 0.098018591818092 L447 -D456 0.0973768955259939 G425 -T440 0.0963491166872023 A419 -R424 0.0960951256736253 H544 -A552 0.0953094206950293 S414 -A534 0.0943186925197872 F427 -E433 0.0933450925112398 L540 -N551 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