[Mon Aug 29 18:13:27 2016] >Input file: TMA4AWE1M2G.pdb >TM segments: 240-265_ 302-326 MAIDEN score = 29.3170 Below is the ranking list of the residue pairs and their related pseudo-energy (the lower, the better). This includes inter-chain residue pairs. The maximum (least favorable) pairwise energy value has been set to 10. See the MAIDEN software article: Postic,G., Ghouzam,Y. and Gelly,J.C. (2015) Biochimie, 115, 155–161. ----------- ---------------- Calpha pair Empirical energy ----------- ---------------- L305 -T320 10 S249 -L256 10 P246 -V258 5.23181320996542 V309 -T315 1.24758131909537 F248 -V255 1.18610078506081 I245 -L259 1.12493808566871 I245 -V258 1.07959411750625 E250 -L256 0.967607559278596 V308 -I318 0.949213091099899 F248 -L256 0.899674711859795 V247 -L256 0.891178521185585 F248 -T315 0.74469656908538 V309 -S316 0.739203758235789 V247 -V255 0.738789506787329 V307 -T315 0.716267803402768 H304 -L321 0.714104074809993 I245 -Y260 0.702954945562304 Y242 -L305 0.692048963269334 L305 -L321 0.67487374560391 D263 -H304 0.638619750124043 P246 -L259 0.638530724900669 P246 -L256 0.626828397699688 F248 -G257 0.580128938192893 V307 -I318 0.577182619199681 E250 -V255 0.568254110921913 Y242 -V319 0.567868874069621 L305 -V319 0.545329500877794 S249 -V255 0.539350371480822 V309 -G317 0.538005078045402 N254 -Y312 0.533418664864069 L305 -I318 0.488289008544835 D310 -T315 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