[Mon Aug 29 18:17:54 2016] >Input file: TMA4D7Q9M1G.pdb >TM segments: 109-115_ 196-202 MAIDEN score = -1.0078 Below is the ranking list of the residue pairs and their related pseudo-energy (the lower, the better). This includes inter-chain residue pairs. The maximum (least favorable) pairwise energy value has been set to 10. See the MAIDEN software article: Postic,G., Ghouzam,Y. and Gelly,J.C. (2015) Biochimie, 115, 155–161. ----------- ---------------- Calpha pair Empirical energy ----------- ---------------- E113 -C201 0.373758341005826 G114 -S199 0.213259333850802 G114 -R197 0.187431771918822 D112 -S199 0.124367939912276 F115 -G196 0.0726761046548603 W111 -I198 0.0711329514823026 F115 -I198 0.0425450387094712 E113 -F200 0.0315671287871049 D112 -R197 0.0272712191628419 W111 -C201 0.0119088789337063 W111 -R197 0.00514333871834838 E113 -S199 0.00463372583214666 A109 -G114 -0.00748785016639886 F110 -C201 -0.0121082639842984 W111 -F200 -0.018498724948719 F115 -S199 -0.0251306097918182 D112 -G196 -0.0334504329833063 F110 -I198 -0.0369981517942239 E113 -R197 -0.0529075984784731 F110 -F200 -0.0568832124982759 E113 -I198 -0.058226229977556 F110 -F115 -0.0726115170156012 F110 -R197 -0.0793146924103545 F110 -S199 -0.100234384655304 D112 -F200 -0.124735765737588 D112 -I198 -0.162584410377849 E113 -G196 -0.172125583126276 W111 -S199 -0.22213436099861 F115 -R197 -0.236440967373975 G114 -I198 -0.289340964422852 G114 -G196 -0.412241440171564