[Mon Aug 29 18:19:37 2016] >Input file: TMA4EE11M7G.pdb >TM segments: 533-558 MAIDEN score = -2.0777 Below is the ranking list of the residue pairs and their related pseudo-energy (the lower, the better). This includes inter-chain residue pairs. The maximum (least favorable) pairwise energy value has been set to 10. See the MAIDEN software article: Postic,G., Ghouzam,Y. and Gelly,J.C. (2015) Biochimie, 115, 155–161. ----------- ---------------- Calpha pair Empirical energy ----------- ---------------- R550 -I555 0.581205653230504 V541 -I549 0.288992429280485 A543 -T548 0.274529333165654 A543 -R550 0.26366225587438 A543 -A552 0.251191560713805 H544 -M558 0.238944147079634 R545 -N551 0.230729997190886 T539 -T548 0.219359522429193 L540 -V556 0.209373299189908 S547 -S554 0.196537908694346 L540 -N551 0.188059030666039 R537 -D553 0.17058563488516 R545 -A552 0.162978943127233 T548 -D553 0.162555419812295 L546 -S554 0.160761991311302 D535 -A552 0.135342848041195 L540 -M558 0.134010871440064 S534 -N551 0.132428910239534 I542 -I555 0.129616077315661 T548 -S554 0.11670547331455 A543 -I549 0.115982699857444 L540 -D553 0.108189718657265 A543 -S554 0.1064608263992 S534 -A552 0.103507192996902 V541 -M558 0.0997811690471746 I542 -M558 0.0889234096881428 L533 -L540 0.0888473437123256 S534 -S554 0.0886480208166667 I542 -V557 0.0870230484318171 S534 -D553 0.0837743095441021 T538 -N551 0.0826190925920867 A543 -M558 0.0789510666702495 I549 -S554 0.0781078188626929 V541 -R550 0.0766423995428323 V541 -L546 0.075622016253476 D535 -L540 0.0696092336700573 G536 -S554 0.066459075729437 R550 -V556 0.0551987031509724 S534 -L540 0.0545075675296871 S547 -I555 0.0534189817018549 S534 -T539 0.05125736429946 L540 -R545 0.0446608754211359 D535 -S554 0.0433517835523512 I542 -A552 0.0424305143803809 R545 -V556 0.0419019679418255 I549 -M558 0.0410948492608263 H544 -V557 0.0383281215602915 T539 -R550 0.0381970919009207 V541 -S547 0.037501274407616 S547 -D553 0.0373818879964243 N551 -V556 0.03474806790086 V541 -T548 0.0334733099210776 L540 -R550 0.0334095863749644 I542 -I549 0.0247331900894778 V541 -N551 0.0205162031606083 L546 -V557 0.0141820762916387 R537 -A552 0.0124491327812946 A543 -N551 0.0108312801311974 H544 -I555 0.0107008003066717 H544 -V556 0.00940869187655213 A552 -V557 0.00910166986148919 L546 -M558 0.00760823529011834 T539 -N551 0.00639846733829064 R545 -R550 0.00551640018133231 L540 -A552 0.00379333421676242 A543 -I555 0.00357975050896808 G536 -D553 0.00187838541469526 A543 -V557 -0.00496376245051033 T548 -I555 -0.00632324880628055 T538 -V556 -0.00761560198824007 I542 -V556 -0.00812559648796807 G536 -A552 -0.00909736094992741 L540 -V557 -0.00993790594152522 T538 -I555 -0.0124026223529992 I549 -V557 -0.0127641301863637 T539 -V556 -0.0135133971309385 I542 -S554 -0.0136075145792035 L540 -L546 -0.0215122572704214 S547 -V556 -0.0217258694007615 H544 -A552 -0.0219490475296178 L533 -A552 -0.0228924913933 R545 -I555 -0.03017662212326 T538 -I549 -0.0444242071038729 T548 -V556 -0.0524860353410852 I542 -R550 -0.0537299371888853 L533 -T539 -0.0701633083564115 L533 -N551 -0.0711575635392809 I542 -S547 -0.0721108459543589 L533 -V541 -0.0729822670685163 L546 -D553 -0.0742890133967535 A543 -V556 -0.078394525680678 L540 -T548 -0.081427157196134 R537 -S554 -0.0833218406707323 I542 -D553 -0.0859841134505661 L533 -D553 -0.0872228018844615 S534 -V541 -0.0882319834341652 R545 -V557 -0.0884677664840012 V541 -V557 -0.0922649718806641 H544 -R550 -0.0926720485037045 H544 -S554 -0.101136510170603 T539 -A552 -0.106538431088881 T538 -D553 -0.107546418331631 R545 -S554 -0.109534270000131 T539 -D553 -0.110599634818863 I542 -N551 -0.11148625367851 D535 -V541 -0.113767584072998 T538 -A552 -0.11740750937765 L546 -V556 -0.124127885072071 L546 -I555 -0.131610508600729 D535 -N551 -0.13262693728789 T539 -I549 -0.145840545003419 I549 -V556 -0.164590892010849 A543 -D553 -0.169664065033783 T539 -I555 -0.17362279949392 V541 -D553 -0.176450315238613 V541 -V556 -0.18963200752053 D535 -D553 -0.214989894869175 S547 -A552 -0.222799461278288 V541 -A552 -0.223466078079133 T538 -S554 -0.233897811704464 H544 -N551 -0.23438408884731 T539 -S554 -0.240705089172869 L533 -T538 -0.245728915480784 I542 -T548 -0.248549825309781 H544 -I549 -0.249583007504937 L546 -N551 -0.253007122409842 L540 -I555 -0.261213078491473 I549 -I555 -0.273831396282763 R550 -V557 -0.289995358959029 L540 -S554 -0.294779969451623 L546 -A552 -0.305431947615313 V541 -I555 -0.329693350243859 V541 -S554 -0.344911519726133 L540 -I549 -0.386875756356206