[Mon Aug 29 16:46:14 2016] >Input file: TMA4XML5M3G.pdb >TM segments: 363-383_ 403-450 MAIDEN score = 18.0457 Below is the ranking list of the residue pairs and their related pseudo-energy (the lower, the better). This includes inter-chain residue pairs. The maximum (least favorable) pairwise energy value has been set to 10. See the MAIDEN software article: Postic,G., Ghouzam,Y. and Gelly,J.C. (2015) Biochimie, 115, 155–161. ----------- ---------------- Calpha pair Empirical energy ----------- ---------------- K432 -L437 10 K432 -D438 10 R382 -C404 1.19636506765657 A429 -K445 1.07700232989727 A381 -K408 0.909583182189891 D434 -E439 0.886701583877836 L406 -D434 0.876392988425322 S405 -I410 0.747319889914039 I419 -N427 0.734844366176471 L406 -P433 0.695276432725093 I413 -F418 0.667399130251828 I365 -K373 0.652851576555458 F383 -C404 0.609664811035856 F383 -S405 0.527300969667304 A429 -L446 0.484332332846943 F430 -D438 0.477598222520185 R382 -L406 0.460072230729361 A435 -I440 0.458741984151034 K432 -I440 0.454605901891043 F430 -L437 0.427824060154594 N409 -K432 0.421900182651575 K432 -K445 0.392149411168374 A425 -A447 0.379179664877282 A425 -D450 0.368784262574083 I428 -A449 0.368543409109384 A429 -A443 0.341652507511972 A429 -L437 0.341415899040705 R407 -K432 0.313076455775375 R382 -L403 0.311894416316621 K432 -A444 0.307434807417838 S405 -G431 0.294513656164376 K441 -L446 0.29274896061661 A425 -G431 0.289539683931482 N409 -P433 0.287099205697277 K432 -K441 0.274922533581903 N378 -E416 0.273181998216184 L366 -K373 0.2716539650787 G367 -K373 0.266494798102598 G370 -L376 0.264322819381672 N378 -I412 0.24248896774394 L437 -W442 0.238981296866235 E439 -Q448 0.232388728548317 G431 -Q448 0.227324509290467 N378 -F383 0.222952552623792 A425 -K432 0.222833717162548 G367 -L376 0.221480612624591 S371 -L376 0.219544571683281 T436 -W442 0.216146651819405 S405 -A435 0.207732689628583 A426 -D450 0.20438562801768 A429 -D438 0.201685676148428 A381 -I412 0.199868716809101 N378 -L406 0.19450268052137 D422 -K432 0.191562994950278 R407 -D434 0.189370880968554 N427 -K432 0.188145987926187 I440 -A449 0.185258636080405 L403 -P433 0.183367212368099 R407 -A435 0.183162047828588 T423 -A449 0.180378405814857 D422 -A429 0.179756434115054 L379 -G411 0.179671766292261 L406 -K432 0.179495369090954 G411 -L437 0.179261113796805 K432 -L446 0.178485544093457 A381 -I410 0.177279020753286 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