[Fri Aug 26 16:40:58 2016] >Input file: TMA5FID0M1D.pdb >TM segments: 538-569_ 571-587 MAIDEN score = 7.8299 Below is the ranking list of the residue pairs and their related pseudo-energy (the lower, the better). This includes inter-chain residue pairs. The maximum (least favorable) pairwise energy value has been set to 10. See the MAIDEN software article: Postic,G., Ghouzam,Y. and Gelly,J.C. (2015) Biochimie, 115, 155–161. ----------- ---------------- Calpha pair Empirical energy ----------- ---------------- A539 -K544 1.4881040693514 P545 -V579 1.45294289522966 V546 -V580 1.34733258685631 L548 -I582 1.17701062126166 L547 -I582 1.1721209558767 T551 -C558 1.09025677353698 M561 -W566 1.01502712879447 F550 -V586 0.966325928865942 F538 -K544 0.956629796909514 L548 -L581 0.898585858760767 W566 -V571 0.889737189785501 C558 -E563 0.883979136259342 F538 -V580 0.771033345968368 T551 -L584 0.734988312687141 V546 -L581 0.712613238459599 L547 -V580 0.685263563415266 V546 -I582 0.552532127145758 L575 -V580 0.544678384079887 A539 -V579 0.523421676700895 A554 -D587 0.509431516539557 D549 -L581 0.459541336501768 L547 -V579 0.458964717470625 F550 -L584 0.440571386743248 V546 -V579 0.4393055672566 T551 -S583 0.398259526158689 C555 -E563 0.397649091735714 F550 -Y585 0.394823796104255 F550 -I582 0.372369807046981 K560 -V565 0.361229243982336 E563 -D568 0.347840233290886 L548 -L584 0.319845973112721 F550 -S583 0.303430160367069 V556 -Y585 0.297611010215858 L575 -L581 0.296025142589656 W566 -L572 0.289030291530217 K544 -V580 0.284061777128875 Y553 -D587 0.276191299496014 V574 -V579 0.275846306050595 R559 -L564 0.274448073648605 T551 -W566 0.27016351956611 V556 -D587 0.255739289871411 Y553 -R559 0.242601760320864 S567 -L572 0.241142508506349 F550 -D587 0.235712149379808 L547 -L581 0.228870355001447 D549 -Y585 0.228257646698903 S567 -S583 0.224849005989364 V565 -V571 0.219536140268617 V565 -L572 0.209722649985916 Y553 -K560 0.204010612248871 V546 -L575 0.199044196205561 C555 -D587 0.195011553408021 L548 -S583 0.194493726149107 D549 -K560 0.194310782155603 G552 -D587 0.192289898574749 K544 -V579 0.190197247456521 P545 -G573 0.180643994930713 K540 -L581 0.176687665599395 N557 -L564 0.172424998402438 Y553 -E562 0.172377060479462 Y553 -S583 0.169918625117303 K540 -L547 0.168943040720493 K541 -D578 0.167077581929096 T551 -V586 0.165109183056214 G543 -N577 0.164409600998336 V571 -V580 0.162560653644117 F538 -G543 0.155500415533453 G552 -M561 0.154928136768482 K560 -D568 0.150946950102068 N557 -D587 0.148763005092371 D549 -N576 0.148519695998314 S567 -L581 0.148257687178015 D568 -N577 0.142013013187206 N557 -E563 0.141869002497742 V571 -D578 0.141632233001506 W566 -N576 0.141475283384852 S567 -V574 0.139860998992734 K544 -I582 0.136055001561411 V546 -V571 0.132519198488338 L548 -V586 0.129531237037898 F538 -S583 0.128331748544962 V574 -L581 0.127746524454248 G552 -E562 0.126326131152931 M561 -L572 0.124635458253838 Y553 -C558 0.122391371023256 A539 -L548 0.117529093667085 A569 -N577 0.117523377615014 Y553 -Y585 0.116012272882543 L548 -L575 0.111944576252142 S567 -N576 0.110561931424115 G543 -V579 0.110464784143995 L572 -I582 0.109473181689341 A539 -D578 0.107168974321767 D549 -L575 0.104586731348891 F538 -D578 0.104126109574551 C558 -S583 0.10310813603623 W566 -G573 0.103091903734224 T551 -V565 0.102709864200922 A569 -V579 0.102299276188895 G552 -I582 0.101447849215642 K540 -P545 0.0957244793961731 Y553 -M561 0.0955279594719491 F538 -N577 0.0950886853129145 A542 -L581 0.0894101788474646 C555 -S583 0.0884351314861484 A539 -N577 0.088393541507652 V546 -N576 0.0879914252819599 P545 -V580 0.0866329770295349 E562 -A569 0.0861299047719486 A539 -V574 0.0856682796913359 L547 -L572 0.0844110127843631 V565 -L575 0.0776706118508144 A539 -V580 0.0746152996295599 R559 -S567 0.0743717364656855 T551 -K560 0.0738531672028517 E562 -D568 0.0737573443752089 A542 -N576 0.0727402989494479 N576 -I582 0.0719416564888133 D568 -G573 0.0695471045788381 C558 -L584 0.0684444000830142 L548 -W566 0.0684174349922451 V565 -V574 0.0667762816760273 A542 -L575 0.065627693068711 W566 -S583 0.0648704730457156 A569 -L581 0.0605917587762761 E562 -V571 0.0591039344384008 L547 -N577 0.0588444539286677 G543 -N576 0.0581482346785869 T551 -M561 0.0567725424706574 L547 -V574 0.056722121027299 V556 -V565 0.0566599310237148 F538 -L575 0.0559299913494486 A554 -L584 0.055434984021367 E562 -S567 0.0537683590091858 A539 -N576 0.0497569373735142 G543 -D578 0.0497024860177815 F550 -M561 0.0489706437912312 N557 -Y585 0.0418758321982029 A539 -V546 0.0418335309154507 A542 -L547 0.041019632568823 D549 -N557 0.0401097991598158 F550 -E562 0.0394831147783679 A542 -N577 0.039040589577394 W566 -I582 0.0379202354686768 C558 -V586 0.035157081425595 V556 -V586 0.0348675048545104 K541 -V546 0.034494425453375 D549 -S567 0.0319018844971302 V546 -N577 0.0314131543134741 D549 -V565 0.0283975103596514 L572 -V580 0.0280104629381617 N557 -E562 0.0279846942807818 K541 -V579 0.0277815938123537 N576 -L581 0.0261918400061041 T551 -N557 0.0260585074582018 D568 -N576 0.0257927334369059 G573 -L581 0.0249009663588406 L547 -V586 0.0244797083600914 A539 -L575 0.0241721926485328 A554 -K560 0.0240657220202207 K544 -V574 0.023934695458671 E562 -L572 0.0234404679561713 L572 -N577 0.0214656220675863 G552 -K560 0.0211158441561423 L548 -L572 0.0207184253655015 N576 -S583 0.0195158411109042 E563 -V571 0.015754907206795 V556 -E563 0.015589653468134 C558 -S567 0.0146231485635564 L548 -V574 0.0127954860384651 C555 -L584 0.0126016072294266 M561 -A569 0.0113450701230926 V546 -D578 0.0100508391723331 V546 -L572 0.00973662823931143 P545 -V574 0.0088047711429029 D549 -D587 0.00841567589780556 K544 -N577 0.00689038234573847 K544 -N576 0.00520258690807562 L547 -V571 0.00248132375710597 S567 -L575 9.74082526834508e-05 T551 -S567 -0.000373629333162206 F550 -W566 -0.000702704321252412 L547 -G573 -0.00139598891244042 K560 -S567 -0.00215316474001481 V546 -G573 -0.00222673897143455 A539 -L581 -0.00334905333709234 W566 -V574 -0.00372291226777044 D549 -V579 -0.0043777405182901 G552 -R559 -0.00438289890258226 Y553 -L584 -0.00563606221782909 L547 -S567 -0.00618806799909044 F550 -R559 -0.00836158462399306 G573 -V580 -0.00843484123676141 D549 -W566 -0.00913499304983478 V571 -V579 -0.010799554610446 K544 -G573 -0.0129400234833819 E562 -G573 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