[Fri Aug 26 16:44:17 2016] >Input file: TMA5KJK1M10D.pdb >TM segments: 319-334_ 390-397_ 421-429 MAIDEN score = -5.4066 Below is the ranking list of the residue pairs and their related pseudo-energy (the lower, the better). This includes inter-chain residue pairs. The maximum (least favorable) pairwise energy value has been set to 10. See the MAIDEN software article: Postic,G., Ghouzam,Y. and Gelly,J.C. (2015) Biochimie, 115, 155–161. ----------- ---------------- Calpha pair Empirical energy ----------- ---------------- Y320 -I325 0.906901851599078 F329 -D395 0.522026952921714 V324 -Y424 0.354265463191251 N328 -C334 0.276162816349845 N328 -P391 0.260089066610099 Y320 -P391 0.252554897513794 N328 -G423 0.218756807868292 D319 -V324 0.17925616612093 K323 -L421 0.176392126906746 G322 -L421 0.173717577227562 F329 -T426 0.16381876904904 N328 -E396 0.150297909539579 F329 -V392 0.149051395419709 K323 -Y422 0.146009075065477 Y320 -L393 0.143294355262431 F329 -V425 0.135821112650583 Y320 -L421 0.126578590155416 N328 -Q428 0.125489385000885 G322 -Y422 0.122822695060286 L327 -L421 0.114475787676812 G423 -Q428 0.114339068004746 K321 -F326 0.111379025863089 N328 -Y390 0.107470228139709 Y320 -L327 0.100158974112219 N328 -Y424 0.10003627256295 I325 -G427 0.0994048557231471 F326 -L429 0.0900872734320308 N328 -D395 0.0895228188669726 I325 -Y390 0.0890096182367373 A331 -L393 0.0740883430985573 D319 -F326 0.0674450182978543 T332 -L393 0.0592825357435176 I325 -L393 0.0591520318215402 T332 -D395 0.0559709958106502 F329 -E396 0.0545136183934871 K321 -L327 0.0526158558882148 Y320 -Y422 0.0509503085300196 F329 -P391 0.0482865683798783 Y320 -N328 0.0481144663252944 V324 -G427 0.0470348585701454 F329 -M394 0.0409688337529044 F326 -Y390 0.0341538748481582 V324 -T426 0.0313208742052453 N328 -G427 0.0297486859247234 N328 -L429 0.023521933138914 N328 -Y422 0.0216417606028219 I325 -V425 0.0204341123046869 L327 -V392 0.0189926999528707 F326 -M394 0.0154795069089531 D319 -I325 0.0146280106228769 A331 -D395 0.0101737648283873 L327 -P391 0.00902307741895214 V324 -G423 0.00685206930032756 Y422 -Q428 0.00617825962151652 F326 -V392 0.00581552145252529 L327 -D395 0.0026948022850779 W330 -V425 0.00162074641987076 G322 -L327 -0.00131067478299596 A331 -V392 -0.00548271243286225 V324 -L429 -0.0135094603404289 L327 -T397 -0.0168982375844702 F329 -T397 -0.0182783560734381 D319 -P391 -0.0191530933243302 F326 -V425 -0.0199621102035064 I325 -Y424 -0.028011149308087 L327 -M394 -0.0296854481349786 W333 -M394 -0.0303611013529965 W330 -D395 -0.031821934003815 K321 -Y422 -0.0324892139425028 G423 -L429 -0.0360901026457496 L421 -G427 -0.0366479610960967 I325 -L429 -0.03745363463059 W330 -Y390 -0.0391060631412391 C334 -M394 -0.0397559175509583 L327 -Y422 -0.0414612788552189 A331 -T397 -0.0435675873311483 N328 -T426 -0.0489086131485412 F329 -G427 -0.0525393221851689 W330 -T426 -0.0567588552985308 W330 -T397 -0.0579806112589943 N328 -L421 -0.0630990347788312 W330 -Q428 -0.0632460165216803 F326 -L393 -0.0672177949207464 K321 -L421 -0.0691555191132567 W330 -G427 -0.0708474436077822 Y320 -V392 -0.0764542637976178 I325 -L421 -0.0778028136566924 T332 -V392 -0.0788154694405687 F326 -Q428 -0.0855215185828042 T332 -M394 -0.0855257347021823 D319 -L393 -0.0860767851556662 L327 -Y390 -0.0865429843092067 I325 -P391 -0.0911499283556516 D319 -L327 -0.0922855621160162 F329 -Y424 -0.0961779418812494 A331 -E396 -0.0964622225427028 A331 -M394 -0.0976045139373181 Y390 -L429 -0.103096834493099 I325 -Q428 -0.105227445575723 F326 -G427 -0.108538337484989 I325 -V392 -0.112044220000196 F329 -L429 -0.112194708361554 L327 -T426 -0.115665675354304 I325 -T426 -0.121140246010932 N328 -T397 -0.123307438775499 F326 -P391 -0.125460557482169 N328 -V425 -0.127678549841777 F329 -G423 -0.12824190815959 W330 -P391 -0.133070611092505 Y422 -G427 -0.135156224138697 I325 -Y422 -0.137941733597745 N328 -M394 -0.14359266969672 F329 -Q428 -0.147142370806074 L327 -E396 -0.149024648727627 Y422 -L429 -0.149539668269637 L327 -G423 -0.158336304910899 V324 -Y422 -0.165465400706688 C334 -Q428 -0.165483738545653 L327 -G427 -0.166822232659964 F326 -Y424 -0.173233356811905 F329 -Y390 -0.176692632707798 F326 -Y422 -0.179379101469449 Y320 -F326 -0.180192027022879 F326 -G423 -0.187410009633463 F326 -L421 -0.187915536883907 N328 -V392 -0.192200825875283 N328 -W333 -0.194323831475465 Y424 -L429 -0.195580874928082 W330 -E396 -0.196424946275093 L327 -L393 -0.20056689734648 L327 -Y424 -0.213330466525393 F329 -L393 -0.21420886382743 T332 -E396 -0.21573888754836 W330 -L429 -0.223809000925319 L327 -V425 -0.237180990267555 W330 -V392 -0.240772652991352 W330 -M394 -0.245780875655268 N328 -L393 -0.248875421058035 I325 -G423 -0.257314084413366 F326 -T426 -0.266183444057612 L421 -T426 -0.30635079832576 W330 -L393 -0.32929438326604 L327 -Q428 -0.350820483341201 V324 -L421 -0.37944555106551 L327 -L429 -0.418952898352515 F329 -C334 -0.649137673009637