[Mon Aug 29 16:58:01 2016] >Input file: TMA5KJK1M6G.pdb >TM segments: 323-334_ 387-398 MAIDEN score = -3.0844 Below is the ranking list of the residue pairs and their related pseudo-energy (the lower, the better). This includes inter-chain residue pairs. The maximum (least favorable) pairwise energy value has been set to 10. See the MAIDEN software article: Postic,G., Ghouzam,Y. and Gelly,J.C. (2015) Biochimie, 115, 155–161. ----------- ---------------- Calpha pair Empirical energy ----------- ---------------- W333 -M394 0.401076584078271 A331 -G398 0.326185445881819 V324 -Y390 0.30087950699357 N328 -C334 0.273272718806366 T332 -L393 0.236326992571676 L327 -V392 0.20929157678655 N328 -Y388 0.202769952746163 A331 -D395 0.184235057611484 F326 -V392 0.16898483877663 I325 -T389 0.152274938256824 L393 -G398 0.144990954704644 Y388 -M394 0.138296181349974 C334 -Y388 0.132042030797876 T332 -E396 0.131673210403715 T332 -T397 0.128194482153216 C334 -G387 0.124339530984289 F329 -G398 0.119033879306774 L327 -Y388 0.117877438601298 T332 -G398 0.117349246258 T332 -V392 0.111536643721092 F329 -T397 0.0683403412941317 I325 -L393 0.0667910825788605 N328 -T389 0.0653874414125388 N328 -Y390 0.0618188126583821 T332 -Y388 0.0589751073265661 A331 -L393 0.0403768421269097 F326 -T389 0.0372316565090034 V324 -P391 0.0252231223143644 W330 -D395 0.0234420009274494 G387 -V392 0.0202826820576067 L327 -T389 0.0160518752515491 A331 -V392 0.0148235759347326 W333 -Y388 0.0141715156114155 F326 -Y388 -0.000232300986473977 L327 -D395 -0.0138885573462328 F326 -L393 -0.016603605621798 A331 -T397 -0.0218398578089634 K323 -Y390 -0.023634424295282 F329 -Y390 -0.0252308400702224 W330 -Y388 -0.0258075154125126 W330 -Y390 -0.0313126878426149 W330 -G398 -0.0314524888493171 C334 -V392 -0.0319693628492583 A331 -E396 -0.0412309381037144 T332 -M394 -0.0581087245491707 Y388 -L393 -0.0761014141550664 N328 -D395 -0.0896635861644541 I325 -Y388 -0.102929351653728 N328 -V392 -0.108840235956475 W330 -L393 -0.109570313613252 F326 -P391 -0.110379315046516 L327 -M394 -0.119209392710531 C334 -M394 -0.123515072178319 L327 -Y390 -0.145596196287431 F329 -P391 -0.145726819662325 W333 -D395 -0.149768811090475 F329 -C334 -0.150048638299361 W330 -E396 -0.153737718498493 I325 -Y390 -0.158524076252473 F326 -Y390 -0.161623502138041 L327 -L393 -0.163201967705888 F329 -D395 -0.163665848787828 W333 -V392 -0.165387054519375 F329 -L393 -0.170288878611112 W333 -L393 -0.173641641317515 F329 -Y388 -0.176175463406546 W330 -P391 -0.180189728533535 K323 -P391 -0.1987839274486 A331 -M394 -0.203842777315044 F329 -E396 -0.204361843052868 N328 -M394 -0.210690609263004 I325 -V392 -0.211063650675986 T332 -D395 -0.216055999134297 N328 -W333 -0.228004222874001 N328 -L393 -0.228505175359714 W330 -V392 -0.230903890163062 I325 -P391 -0.250641453007018 F329 -V392 -0.296726830160923 F329 -M394 -0.307728011122903 W330 -M394 -0.317663200790761 N328 -P391 -0.341223111801753 L327 -P391 -0.452637564742531