[Mon Aug 29 17:05:07 2016] >Input file: TMA5TZ19M1G.pdb >TM segments: 157-171_ 208-218 MAIDEN score = 1.5557 Below is the ranking list of the residue pairs and their related pseudo-energy (the lower, the better). This includes inter-chain residue pairs. The maximum (least favorable) pairwise energy value has been set to 10. See the MAIDEN software article: Postic,G., Ghouzam,Y. and Gelly,J.C. (2015) Biochimie, 115, 155–161. ----------- ---------------- Calpha pair Empirical energy ----------- ---------------- A160 -R165 1.05454979941512 R166 -V214 0.841304082698867 L167 -V214 0.719740456018733 L167 -Y212 0.672108083453427 L167 -R213 0.482800543785462 V162 -A216 0.428607785441245 R166 -L171 0.390923867129095 A160 -A218 0.362581428994862 V162 -L167 0.332780191991874 A163 -S215 0.323568279126218 A163 -V214 0.317525479337343 R165 -Y212 0.309952256277123 D169 -Y212 0.268490780564147 H170 -Y208 0.267027673480715 L171 -V209 0.262855322412054 A168 -R213 0.256845816515253 D169 -V209 0.239565270223622 A164 -D169 0.238587458971882 R165 -H170 0.227157183318203 A163 -H170 0.213015982116245 A163 -Y212 0.205029488353719 Q161 -R166 0.194058180639464 R166 -N217 0.192137201976791 H170 -A211 0.191917018733455 R165 -N217 0.189828133446928 R165 -S215 0.158653367342172 A164 -Y212 0.148667088466951 H170 -A216 0.147760260239179 R166 -A218 0.136093198599198 L167 -V209 0.128972423950922 Q157 -A164 0.12799233568485 A168 -A210 0.123963281122029 A160 -N217 0.12057853066971 A164 -A211 0.111654596736079 A168 -Y208 0.110623607185077 V162 -H170 0.10979817813068 A164 -N217 0.108234089685774 Q157 -A163 0.104271016295574 R166 -R213 0.103038401133759 A163 -A216 0.100586520238226 L167 -A210 0.0979448452581483 A164 -V209 0.0932501285382004 A168 -S215 0.0925815791295048 A163 -L171 0.0919310280777716 A160 -A216 0.0907061712286334 T159 -A168 0.078993015902161 A164 -A218 0.0749320733056562 Q157 -A218 0.0711627747229855 H170 -S215 0.0675449040177416 T159 -R166 0.0617641416450364 Q161 -V214 0.0517290650773878 A168 -V209 0.051514169068287 D169 -V214 0.0490295488536674 V209 -V214 0.0472151046287888 V162 -R213 0.0444848236847712 H170 -A210 0.0426886538503939 Q161 -A218 0.0418416686299607 A168 -A211 0.0361861268055645 A168 -A216 0.0280191874437241 L171 -R213 0.0246437662606906 R165 -A216 0.022179478935854 E158 -R166 0.0207018048285681 R165 -A218 0.0148039215754663 A160 -A168 0.0137427073922156 Q161 -S215 0.0114474118930281 D169 -S215 0.00980860728417232 Q157 -R165 -0.00259133209827356 Q161 -A216 -0.00525077367148619 A163 -A211 -0.008213827816685 E158 -R165 -0.0208135832835242 Q161 -D169 -0.021140367013845 A160 -L167 -0.0363326997171285 E158 -A163 -0.0366112593367505 T159 -A218 -0.0391913897559215 T159 -D169 -0.040450465403163 Q161 -N217 -0.0416967853595744 L171 -Y212 -0.0449808592568077 V162 -Y212 -0.0470251984121033 D169 -R213 -0.0479602158718857 E158 -A168 -0.0492586249878255 A164 -R213 -0.0548220232739958 R166 -Y212 -0.0573345679071564 A164 -H170 -0.0582170785393932 T159 -L167 -0.0591216154626264 H170 -V209 -0.0624296410918506 V162 -N217 -0.0637434699638968 V162 -A168 -0.0689737176919532 T159 -R165 -0.0724965815947374 R165 -R213 -0.0758392750234955 L171 -Y208 -0.0799818048425944 D169 -A211 -0.0805766213316108 A160 -D169 -0.0818824657167774 A168 -Y212 -0.0956343816101317 T159 -A164 -0.0981233695699593 V162 -L171 -0.102991087997482 R166 -S215 -0.104818028761167 A163 -D169 -0.105102944515059 R166 -A216 -0.10786472341093 R166 -V209 -0.136440254973127 H170 -R213 -0.139766638082274 A168 -V214 -0.147426295848436 R165 -V214 -0.152907349415413 R166 -A211 -0.158301869662659 D169 -A216 -0.160811085153744 A160 -R166 -0.170475202598686 A163 -R213 -0.174459038624353 A164 -S215 -0.192011063976462 L167 -N217 -0.194090903549052 A163 -N217 -0.19441320896303 L167 -Y208 -0.195600649649058 L171 -A211 -0.196959344554733 Q161 -A168 -0.206404919943269 A164 -A216 -0.211475382386808 H170 -V214 -0.228208952800361 L171 -V214 -0.2321960988241 L167 -A216 -0.237850188309999 D169 -Y208 -0.241480856528923 A163 -A218 -0.248234794897958 L167 -A211 -0.252916270380666 A164 -L171 -0.266905803402853 L167 -S215 -0.267623844588265 R165 -L171 -0.268842171042077 V162 -D169 -0.270913239650576 Q161 -H170 -0.27149569538218 A163 -A168 -0.273544903011802 L171 -A210 -0.290283013579015 Q157 -V162 -0.295722456316629 E158 -A164 -0.298231795543106 V162 -V214 -0.324403744446661 V162 -S215 -0.354473992567491 H170 -Y212 -0.362425560037021 V162 -A218 -0.363381949944246 A164 -V214 -0.432302548081402 Q161 -L167 -0.514563727950028