[Fri Aug 26 17:07:11 2016] >Input file: TMA5U4N4M1D.pdb >TM segments: 64-92 MAIDEN score = -3.6444 Below is the ranking list of the residue pairs and their related pseudo-energy (the lower, the better). This includes inter-chain residue pairs. The maximum (least favorable) pairwise energy value has been set to 10. See the MAIDEN software article: Postic,G., Ghouzam,Y. and Gelly,J.C. (2015) Biochimie, 115, 155–161. ----------- ---------------- Calpha pair Empirical energy ----------- ---------------- P67 -P72 0.725318189503177 A76 -R81 0.391780625554222 K64 -P70 0.365170344286003 M73 -A78 0.356755064207054 T74 -R79 0.286766463147072 K83 -K89 0.260202947178543 R82 -K89 0.252900877306484 R79 -A86 0.228006856304625 P70 -Q77 0.226892268958077 M73 -R82 0.222554268123124 A75 -A80 0.21952441340116 A69 -A75 0.202786682580129 K83 -S91 0.183905626458932 P72 -R81 0.17570446652629 G66 -A75 0.167041218839119 P70 -R79 0.161306429107367 T74 -K83 0.160659918898691 M73 -S84 0.155267541008998 A71 -R79 0.150999873798748 A80 -G87 0.149488578573853 Q77 -R82 0.148543767128572 G66 -T74 0.144158406259655 A71 -A76 0.142726818366054 P67 -T74 0.140419801081236 G66 -P72 0.132820464445738 A71 -A80 0.12332156107876 R81 -G87 0.120350194804346 A80 -P88 0.115089706850582 V68 -Q77 0.104782440804056 R79 -G87 0.100920159430632 A76 -S84 0.0994863698903892 A76 -L85 0.0663305524286052 V68 -A75 0.0628628649058114 M73 -L85 0.0623570844393573 K64 -A69 0.0513647960491816 A69 -A78 0.0453117463230867 V68 -A78 0.0448814023984898 K65 -T74 0.0408806056920278 T74 -S84 0.0400934283347345 P70 -R81 0.0376336289340764 A69 -Q77 0.0370412956519346 Q77 -G87 0.0362473967514063 R81 -A86 0.0337575901967022 G87 -R92 0.0190460952472207 P72 -R82 0.0188214131178865 P67 -A75 0.0158111803264074 A75 -L85 0.0156140066597246 G66 -M73 0.0120179913774727 A78 -A86 0.0117952468422662 S84 -K89 0.00796589189656638 P67 -A76 0.00743713143838576 V68 -A76 0.00662621269294927 A75 -S84 0.00644866603078231 P67 -Q77 0.00453025628797921 A78 -G87 -0.00359275965713657 K65 -P72 -0.00513330931758826 A78 -S84 -0.00534262667428964 Q77 -A86 -0.00770443468397142 R81 -P88 -0.0113989711297813 K65 -A71 -0.012494015676269 Q77 -L85 -0.0144105934574503 T74 -L85 -0.0170434413761691 T74 -R82 -0.0270652131203724 A75 -K83 -0.0306120326302644 P72 -Q77 -0.0310747614463667 Q77 -S84 -0.031817137107745 R82 -G87 -0.0325915010278015 S84 -R92 -0.0332833163214992 T74 -R81 -0.0368408008225168 R81 -L90 -0.04543868510636 A71 -Q77 -0.0480573122971119 P70 -A80 -0.0556985358175437 A78 -K83 -0.0603906300781425 R79 -S84 -0.0697890600901436 P70 -A76 -0.0906930794571436 R82 -S91 -0.0967871294352391 T74 -A80 -0.0976865549411037 M73 -K83 -0.101951592101408 R82 -L90 -0.104042518628586 K64 -M73 -0.10508640387718 R79 -P88 -0.106165295342508 A69 -T74 -0.106347253412278 R82 -P88 -0.10887653813784 A69 -A76 -0.111791408921853 P70 -A78 -0.113258011014455 S84 -S91 -0.121386844413118 M73 -R79 -0.13203843099188 K64 -P72 -0.135380223914493 L85 -R92 -0.135452374926174 A75 -R81 -0.137931103169299 R81 -K89 -0.138290610901384 A80 -K89 -0.140712807213004 P67 -M73 -0.144446744508973 K83 -R92 -0.158161270522156 V68 -T74 -0.165128870742204 P72 -A80 -0.168884708996189 A71 -A78 -0.172618460629405 A80 -A86 -0.174463449831665 A78 -L85 -0.177068593407181 K65 -M73 -0.177288727503438 A76 -R82 -0.181759742762568 A71 -R81 -0.185758543025155 L85 -S91 -0.193824652100352 Q77 -K83 -0.195157700016531 A75 -R82 -0.196338561911583 K83 -L90 -0.198685811645665 A86 -R92 -0.205107201422418 K83 -P88 -0.218280308854554 M73 -R81 -0.240825083907652 K64 -A71 -0.261893434878278 R79 -L85 -0.266241069037356 A80 -L85 -0.303038468246301 A76 -K83 -0.310319583684091 V68 -M73 -0.322060598894662 A86 -S91 -0.327037554321054 S84 -L90 -0.33187184853225 L85 -L90 -0.336221621807507 K65 -P70 -0.350368604134903 P70 -A75 -0.405973677408978 M73 -A80 -0.415149878936779 P72 -A78 -0.422459329091762 P72 -R79 -0.427218819627268 G66 -A71 -0.447590956507364