[Fri Aug 26 17:08:39 2016]
>Input file: TMA5U559S2D.pdb
>TM segments: A330-363

MAIDEN score = 11.9423

Below is the ranking list of the residue pairs and their related pseudo-energy
(the lower, the better). This includes inter-chain residue pairs.

The maximum (least favorable) pairwise energy value has been set to 10.
See the MAIDEN software article:
Postic,G., Ghouzam,Y. and Gelly,J.C. (2015) Biochimie, 115, 155–161.


-----------		----------------
Calpha pair		Empirical energy
-----------		----------------
V338A-V348A		10
V338A-F346A		0.98507992322339
P337A-L352A		0.939847428581263
P337A-S349A		0.912215960220605
D340A-F346A		0.881476837155766
P337A-R347A		0.865179754302495
P337A-R351A		0.854454768380304
P337A-V348A		0.807403856324022
P337A-P353A		0.552405053366261
L352A-V357A		0.530822299346854
P337A-E359A		0.495614460853176
L341A-F346A		0.493238915126726
P337A-E355A		0.4700664787041
A336A-A350A		0.377841243932499
V338A-V357A		0.36007189749699
A336A-V348A		0.353813921606399
V357A-G362A		0.329110204430743
D356A-Y361A		0.3266472495434
Y330A-R351A		0.27695993498446
D340A-V357A		0.242669180334823
P353A-L360A		0.233275741749877
D340A-Y361A		0.232936816545791
V357A-V363A		0.229308908243779
A336A-F346A		0.225912801636859
V348A-D356A		0.225909703771528
F346A-V357A		0.205337379021811
A336A-D356A		0.200428063851509
V338A-G358A		0.200067684232968
R347A-V357A		0.199693780971328
T335A-D356A		0.193937658943894
Y330A-E339A		0.18329684056677
R351A-D356A		0.181038367739842
D331A-R347A		0.178169309726363
P337A-A350A		0.17557134051153
T335A-L352A		0.160773010723856
A350A-E355A		0.158738061425168
E339A-V357A		0.157661549720117
R347A-D356A		0.151688995288105
P337A-D356A		0.151231980561628
P337A-R345A		0.148519171636189
L341A-S349A		0.141508820679514
G358A-V363A		0.141274138690012
A333A-R347A		0.140471763018222
A350A-D356A		0.133359503614459
V338A-L352A		0.132030739289078
Q332A-A350A		0.126350760547414
A336A-S349A		0.123654192513261
V338A-E359A		0.120503501449387
A336A-G358A		0.117254372904832
E339A-A350A		0.112161897110824
A350A-L360A		0.110980507060269
P353A-G362A		0.106193209286934
V338A-G362A		0.0990823120750077
V348A-I354A		0.0986921884033229
E339A-E359A		0.0942343719069123
V348A-L360A		0.0938915552547241
D331A-P337A		0.0903907037113894
V338A-S349A		0.0849517979495314
E355A-L360A		0.0849366997921148
E355A-V363A		0.0846554616919342
E334A-R351A		0.0833982695147713
E334A-R347A		0.080578147886361
A333A-V348A		0.0799313979926777
D340A-S349A		0.0773254753586485
Y330A-V338A		0.0758012876812728
A336A-L341A		0.0750932111703846
D331A-S349A		0.0746972352915087
D340A-R347A		0.071679987890563
R347A-L360A		0.0699625649452322
T335A-R347A		0.0689610803149142
R347A-Y361A		0.0681574018014768
E339A-Y361A		0.067578624997332
Y330A-V348A		0.0641308101931819
G342A-Y361A		0.0616120624906582
E339A-F346A		0.0608732399787786
Y330A-A350A		0.0602282919449029
E339A-V348A		0.0591691690972649
S349A-D356A		0.0568171496522696
S349A-I354A		0.0548988494048782
G342A-V348A		0.0506727337730917
A336A-V357A		0.05043108998699
V338A-K344A		0.0494832384763813
L352A-V363A		0.0490555204261378
P337A-I354A		0.0458282981978106
D340A-L360A		0.0455072837794317
A336A-L360A		0.0424921924696386
V338A-P353A		0.0406648981423015
R351A-G358A		0.0403724590362753
V348A-Y361A		0.0367079392760115
V338A-D343A		0.0365292395755388
R345A-L360A		0.0361468103317302
F346A-D356A		0.0294686177715997
Y330A-A336A		0.0292606610203379
A350A-G358A		0.02015653312081
V338A-V363A		0.0174526727855602
V338A-E355A		0.0173115584138129
P353A-E359A		0.0167840727051249
D356A-G362A		0.0165948096697459
T335A-E355A		0.0123944583630937
Q332A-V348A		0.00936344879072182
A333A-V338A		0.00802904222725642
S349A-E355A		0.00642134239506387
E339A-G362A		0.00525523515358817
T335A-V357A		0.00406578763173648
D340A-G362A		0.00366858549786048
L352A-E359A		0.00316750283593104
V348A-E355A		0.00278198365187032
F346A-I354A		0.00124196332402082
R347A-P353A		-0.00180952740478002
F346A-G358A		-0.00625322723894373
R347A-I354A		-0.00744131014327198
Q332A-P337A		-0.0106400326625256
Q332A-L352A		-0.0114816196745409
P337A-G358A		-0.0121601418203827
E334A-F346A		-0.0129316882710515
T335A-F346A		-0.0162333152331575
S349A-G358A		-0.0176535579312375
P353A-V363A		-0.0191335748081554
T335A-D340A		-0.0197184612297296
S349A-E359A		-0.0208170593278725
P337A-V357A		-0.0209652608858644
Q332A-R351A		-0.0213520849452697
P353A-Y361A		-0.0229418717873875
L352A-G362A		-0.0231625207424697
F346A-G362A		-0.024661622798237
D340A-R345A		-0.028631287614806
P353A-G358A		-0.0303014615439312
A336A-E355A		-0.0304506329457527
G342A-R347A		-0.0320066961513641
Y330A-T335A		-0.0325075848386466
Y330A-S349A		-0.0333653887322787
R345A-G362A		-0.0356872079067436
V348A-E359A		-0.0367440942679496
V348A-V363A		-0.0368998692083347
E334A-S349A		-0.0411756448873764
L352A-L360A		-0.0435239987177076
A336A-P353A		-0.0446665326687077
T335A-I354A		-0.0456798257163
E339A-R345A		-0.0475734519805946
L341A-R347A		-0.0501677873311017
F346A-L352A		-0.0533259257180223
R351A-L360A		-0.0552147961696869
E334A-A350A		-0.0560332534322716
A333A-P353A		-0.0572139701318166
F346A-E359A		-0.0578478096578072
R345A-Y361A		-0.0625203640484351
K344A-G362A		-0.0627761094932184
D331A-A350A		-0.064220615974524
L352A-Y361A		-0.0645225739562347
I354A-G362A		-0.0649342788966418
V348A-G362A		-0.0661942451571962
D331A-R351A		-0.066227454256421
A333A-E339A		-0.0676470097442139
R347A-G358A		-0.0699546132685667
E339A-L352A		-0.071858501230484
F346A-V363A		-0.0745734648744421
A350A-Y361A		-0.0754743503238744
S349A-L360A		-0.0775248118383267
I354A-V363A		-0.077895881068109
A333A-R351A		-0.0780813744330944
R345A-V357A		-0.0781516528994004
P337A-G362A		-0.0792949347764444
E339A-G358A		-0.0794160495789433
E339A-D356A		-0.0796982188981961
D331A-A336A		-0.080034136641816
A336A-Y361A		-0.0819174727306278
F346A-L360A		-0.0821094768735855
E339A-R351A		-0.0821406122055177
A336A-I354A		-0.0836325164383442
E334A-V357A		-0.08410327088699
F346A-R351A		-0.0895146054101379
D331A-V348A		-0.089615840984429
D340A-L352A		-0.0898969246953829
A336A-E359A		-0.093728122317556
E339A-S349A		-0.0958133287964698
Y330A-P337A		-0.0974630674716508
I354A-E359A		-0.10034719188323
T335A-L360A		-0.103126572470904
Y330A-R347A		-0.109836308492641
T335A-A350A		-0.110169029096324
P337A-Y361A		-0.117608310620352
E355A-Y361A		-0.118163655715172
D331A-L352A		-0.118276931076923
R347A-L352A		-0.122464409529334
V338A-R351A		-0.12401542806791
A336A-L352A		-0.12503436188436
A336A-R351A		-0.126490780765849
Q332A-S349A		-0.12699358678818
D340A-V348A		-0.128079994047587
E339A-L360A		-0.128669644131376
Y330A-L341A		-0.134928080608531
T335A-R351A		-0.141733889121385
E339A-K344A		-0.142911243097998
E334A-L352A		-0.145232308715937
A333A-S349A		-0.147281389969306
D343A-Y361A		-0.149965256129007
R351A-V357A		-0.151490446727675
S349A-Y361A		-0.156625973628443
V348A-G358A		-0.161068951486991
T335A-V348A		-0.166155320190182
K344A-V363A		-0.166183924918228
V338A-R345A		-0.166542786909385
F346A-Y361A		-0.166571983180797
T335A-P353A		-0.169514714101554
K344A-Y361A		-0.178310828440853
A336A-R347A		-0.186555574672925
L341A-Y361A		-0.188962702517464
Y330A-L352A		-0.189052066157195
V338A-I354A		-0.192931389803626
E334A-D356A		-0.193161924094502
A333A-A350A		-0.195682641412438
E355A-G362A		-0.201108772132654
R345A-V363A		-0.20888924954454
E334A-E339A		-0.214439902849825
L352A-G358A		-0.217281768494663
V338A-Y361A		-0.218666484075853
V348A-P353A		-0.219307680207899
I354A-Y361A		-0.223232555882155
K344A-L360A		-0.231999338992129
E339A-R347A		-0.237059770428247
E334A-D340A		-0.23828822861322
P337A-F346A		-0.251700456046834
T335A-S349A		-0.25225255299692
E334A-V348A		-0.258703390875086
V338A-D356A		-0.272722707112464
D343A-V348A		-0.274753442563873
E339A-P353A		-0.276492427780064
A333A-L352A		-0.277392961323839
V348A-V357A		-0.294333445240852
D356A-V363A		-0.298568371310615
A350A-V357A		-0.303329712251921
V338A-A350A		-0.342186596113309
E334A-P353A		-0.34612331878272
S349A-V357A		-0.349051356053389
L341A-V348A		-0.380537802382115
I354A-L360A		-0.418040265981849
V338A-L360A		-0.464327310789462
P337A-L360A		-0.517879857568891
V338A-R347A		-0.712788701319844