[Mon Aug 29 17:13:51 2016] >Input file: TMA5U5F5S2G.pdb >TM segments: A54-67_A77-94_A97-118 MAIDEN score = -15.1537 Below is the ranking list of the residue pairs and their related pseudo-energy (the lower, the better). This includes inter-chain residue pairs. The maximum (least favorable) pairwise energy value has been set to 10. See the MAIDEN software article: Postic,G., Ghouzam,Y. and Gelly,J.C. (2015) Biochimie, 115, 155–161. ----------- ---------------- Calpha pair Empirical energy ----------- ---------------- A57A-V103A 1.63557485916793 I112A-L117A 1.22336634603655 V93A-F98A 0.983597671582173 V58A-A109A 0.93162585100573 D67A-L115A 0.895406562710913 V58A-L107A 0.848767393753668 L65A-L115A 0.716476497353063 L65A-V114A 0.661643427688146 C89A-R102A 0.624951633162425 F111A-S116A 0.604468626112885 P92A-F98A 0.59607614755782 L65A-A110A 0.578043630616449 C62A-F111A 0.561496418938369 L59A-A110A 0.511550031023605 L81A-Q105A 0.483646451287465 P92A-A101A 0.457211187273829 G54A-I104A 0.448096454669969 C62A-V114A 0.433513362074058 M60A-L107A 0.432746538805969 V97A-R102A 0.432353834439946 A63A-V114A 0.418780460842655 P92A-V97A 0.418715764793589 C62A-A110A 0.416558517168681 L65A-F111A 0.410349160961412 V88A-A101A 0.404677452690636 A57A-L107A 0.402116444746692 V58A-V103A 0.398733304997646 A57A-I104A 0.395180357988835 R102A-L107A 0.390049631460913 M60A-A110A 0.380854085069929 C89A-V97A 0.358257607823312 C62A-G106A 0.355630410381158 A57A-Q105A 0.353106447564153 F82A-L107A 0.349234768915721 G54A-V103A 0.343932966673633 V58A-G106A 0.343770347186245 L59A-L107A 0.319146500230164 A101A-G108A 0.309845413518715 G108A-S116A 0.294618604708976 M60A-Q105A 0.293249511796003 A110A-L115A 0.292154129648274 V58A-G108A 0.282971870259991 M60A-R102A 0.280488234507527 M55A-V103A 0.267554079884915 M55A-G106A 0.261654424445634 A56A-G108A 0.260986062656586 V58A-A110A 0.256362372986551 C62A-V103A 0.254288315794821 A57A-R102A 0.248002760204824 P92A-T99A 0.238575137385407 A57A-F111A 0.220461456710165 S61A-L107A 0.217930239264235 G54A-S85A 0.213808589648206 G106A-I112A 0.210624030393642 M60A-V100A 0.20853081266699 G78A-V114A 0.206743988862038 T80A-L107A 0.201284692974797 S61A-S116A 0.196365676874593 L81A-G108A 0.192727078877819 V79A-G106A 0.189534539434119 A56A-L107A 0.188917559940551 A110A-A118A 0.186243436254955 R102A-A109A 0.182825055396864 V79A-G108A 0.182598560428851 T80A-F111A 0.181929463162436 M60A-G78A 0.180252184701165 A56A-G106A 0.176705108374802 S61A-Q105A 0.17645284347074 S61A-V103A 0.17590152636245 S61A-L81A 0.17326591156104 L64A-G108A 0.169829561253949 G54A-L107A 0.169449270391283 G78A-A101A 0.164381583341563 S94A-R102A 0.164233501722954 G66A-G78A 0.162642463172959 L64A-G78A 0.16229678313896 C62A-L107A 0.161701407744127 G54A-A110A 0.160288545677293 S85A-R102A 0.159687948342502 G54A-C62A 0.158471247105384 F82A-I104A 0.156241987164405 V58A-Q105A 0.154311305121676 A57A-A109A 0.1526046065719 G54A-G78A 0.150996354516175 G78A-S113A 0.148547720568945 A57A-I112A 0.14510762217862 G54A-S86A 0.143504504674561 A57A-F82A 0.140378046099182 T80A-I112A 0.139697387926256 S61A-F77A 0.13823184595644 A63A-G78A 0.13815441840535 V79A-F111A 0.134926118394272 L91A-I104A 0.133154805489588 S86A-Q105A 0.131868520066778 V100A-L107A 0.129775055815747 M55A-S113A 0.128736439754261 F82A-V103A 0.126355109381922 T99A-G108A 0.12621630946017 V84A-V103A 0.126182788695401 A56A-A101A 0.125808239485881 G108A-L115A 0.1248947116362 V58A-L65A 0.123243631371865 G54A-F82A 0.12193593851765 Q105A-I112A 0.121743099590271 L81A-A101A 0.119283912533708 V83A-G106A 0.118876510516085 T80A-G106A 0.118352477351229 V58A-A101A 0.117449081341366 F77A-Q105A 0.117203538960498 S86A-V100A 0.11688480159134 S86A-V97A 0.116570142344946 G66A-F77A 0.116328505951736 Q105A-F111A 0.116071978551001 G78A-I104A 0.115889490430769 S61A-L115A 0.115313535829721 L59A-S113A 0.114392499774443 A56A-L64A 0.113467192550856 S85A-V97A 0.113398976409939 L65A-L81A 0.113164402558205 F77A-A110A 0.11303189349699 L59A-V114A 0.112423674329536 V88A-T99A 0.111165172234773 M60A-G66A 0.105672921555633 S86A-A109A 0.10423148169592 V88A-G106A 0.104228539527575 V90A-R102A 0.104083649674577 V90A-T99A 0.103806339141394 M55A-S85A 0.103379233739098 L65A-L117A 0.101999982927535 S61A-I112A 0.101746980450488 A57A-G78A 0.101502347466313 V84A-R102A 0.100733060215078 S86A-I104A 0.100180580896217 G66A-G108A 0.0985006446890142 L65A-V79A 0.0982926242734563 I104A-A110A 0.0973888322110583 V58A-L81A 0.0972961895937168 A63A-A109A 0.0962452516281758 A57A-L64A 0.0959061687254371 F77A-F111A 0.0954905790621208 S86A-L107A 0.0950255073668738 S113A-A118A 0.0940198256148097 F77A-G108A 0.0929044330881528 L91A-Q105A 0.0928974622648511 A57A-C89A 0.0924446863901891 V84A-P92A 0.0921614930592183 V58A-L115A 0.0902012429122161 L64A-A109A 0.090110321743216 G78A-L107A 0.0881395784671559 I87A-L107A 0.0877081970436534 T80A-I104A 0.0876627880698235 F82A-L115A 0.086140419179886 L59A-R102A 0.0854186489200831 V58A-V100A 0.0853239715530059 F98A-L107A 0.0849365131580373 T80A-A110A 0.0827402984524479 V79A-I87A 0.0788012830566736 G66A-A109A 0.0784822646186454 T80A-S116A 0.0783519344744148 S85A-T99A 0.0770733694491561 A57A-L65A 0.0768182171999947 L65A-S113A 0.0761722308464226 L81A-A110A 0.0750388459453495 S85A-A109A 0.0743840160749034 V100A-G108A 0.0739074672189814 A57A-V97A 0.0738326592704297 A56A-I104A 0.0735824263356788 V83A-R102A 0.0722478264012549 G54A-V97A 0.0711615493862521 A63A-A118A 0.069976362915249 V79A-S113A 0.0691532887774522 A56A-A63A 0.0677350577679019 V90A-Q105A 0.0673733902797724 A63A-G106A 0.0648997055992893 S85A-A110A 0.0636391679386072 A109A-A118A 0.0636007610563105 V83A-A110A 0.0611300929917507 S61A-S113A 0.0608821105303628 S61A-G78A 0.0607500927732225 D67A-S116A 0.0589713882390996 V88A-S94A 0.0584848431959317 V83A-Q105A 0.0563542834256401 G78A-S86A 0.055891149058084 L64A-L117A 0.0552956677400971 A101A-A109A 0.0550781510677938 V90A-V103A 0.0544717251320472 A109A-L117A 0.0543064384150089 L107A-L115A 0.0534197102036127 D67A-S113A 0.0528565576702394 G54A-S61A 0.0521079805655036 V83A-I112A 0.0517946772484841 S86A-A101A 0.0515972474350672 A57A-V79A 0.0501356787573251 M55A-F111A 0.049412016074718 L107A-S113A 0.048737490531237 A56A-C62A 0.0484786664462651 L64A-A118A 0.0480461667637753 I104A-F111A 0.0473527467252226 S61A-D67A 0.0471226894128717 V79A-V88A 0.0456421208537394 M55A-F82A 0.0441858707146492 V93A-R102A 0.0441677209175673 G78A-A118A 0.0433560455037245 L65A-G106A 0.0413612693598855 G106A-S113A 0.0413197342464893 L64A-S113A 0.0408496369236742 G108A-V114A 0.0404911811029542 A63A-L107A 0.0397611943692158 V83A-F111A 0.0385340739182012 A63A-G108A 0.0377846371463466 A57A-F98A 0.0364221761223904 M55A-I112A 0.0359686388810019 L81A-L115A 0.0355487187361909 L64A-I112A 0.033533556307165 I87A-V103A 0.0328208346541343 S85A-V90A 0.0321376461335996 V79A-V114A 0.0314321302558498 F82A-T99A 0.031054823293859 A57A-L81A 0.0298662095898683 F82A-V90A 0.0284889663492383 S86A-R102A 0.0271809718299032 D67A-A110A 0.0262245627349227 V83A-A109A 0.0252999984182933 G78A-R102A 0.0250584894428085 L91A-V103A 0.0224774106934129 F77A-V114A 0.0197677434697283 A57A-A63A 0.0195823007316527 A56A-V103A 0.018402974691071 G54A-V100A 0.018316847757923 A57A-S85A 0.0174695134981719 V100A-Q105A 0.0173336178330414 V93A-A101A 0.0167511770877091 C62A-G78A 0.0162815008208755 I87A-G108A 0.0161090828454711 G66A-L107A 0.0160779988158 G54A-V88A 0.0156908902147053 V58A-G66A 0.0145741143938736 A63A-I112A 0.0134032863725828 L64A-L107A 0.0124077867288044 M60A-A101A 0.0114439317126505 G54A-V83A 0.0112211078195861 G54A-L81A 0.010712008779219 V58A-V79A 0.0100477903312419 I87A-V93A 0.0092885339311044 V84A-Q105A 0.00893663986129001 M55A-F98A 0.0081714257496599 L59A-A109A 0.00812599343075071 P92A-V103A 0.00715572637837703 S85A-V103A 0.00701475751202718 V79A-I112A 0.00654854078571709 T99A-G106A 0.00641766848713221 G78A-V103A 0.00635602337873653 M60A-S113A 0.00634864081138398 L64A-G106A 0.00556347511507038 T80A-A101A 0.00474405096753872 S85A-I104A 0.00396855927580209 M60A-F82A 0.00354784849683654 F82A-F98A 0.00339015801145548 M55A-C62A 0.00330185993717746 M55A-A101A 0.000869166053575121 L64A-A110A -0.000247887313832962 V83A-A101A -0.000698709330183123 M60A-I104A -0.000737570629265605 V79A-L115A -0.000786083749873434 G78A-L117A -0.00204907509340391 D67A-L117A -0.00228000489462676 C62A-I104A -0.00321078519405127 V88A-F98A -0.00331461579676962 V83A-V103A -0.00341266904881321 F82A-V100A -0.00497035828801629 G66A-V114A -0.00521873170864051 C62A-L81A -0.00629562798200656 V84A-V100A -0.00708855141819331 I87A-G106A -0.00867316903840809 C62A-S116A -0.00886737443178764 A57A-V114A -0.00967312168604906 P92A-Q105A -0.0100960988406511 V103A-A110A -0.0101739797774281 M55A-A63A -0.0103140282302414 G54A-L59A -0.0103530269132355 P92A-I104A -0.0103647324350703 V58A-T99A -0.0127404438082506 A63A-S116A -0.0128699167852453 F77A-A109A -0.0130379515194345 I87A-T99A -0.0137198934090534 C62A-A118A -0.0140632631959314 S61A-F82A -0.0140986532232272 S61A-A109A -0.0152216718561187 A63A-L115A -0.0155132245353178 M60A-I112A -0.0159719793281141 S61A-A110A -0.0160289198110046 V83A-I104A -0.0171131162735509 V58A-S86A -0.0195050152724235 G108A-L117A -0.0201960054253907 T99A-Q105A -0.0207911386094437 F77A-S113A -0.0217621599272105 V97A-Q105A -0.0222927187362151 V93A-V100A -0.0247924501028818 I87A-V100A -0.0269569142315738 V90A-I104A -0.0272770579483157 V83A-G108A -0.0274967950578198 M55A-T99A -0.0275226194983351 S85A-A101A -0.0277332715259373 T80A-L115A -0.02811400350144 I87A-F98A -0.0290540430247592 I87A-V97A -0.0304821880944806 S86A-T99A -0.0318778217089366 F77A-I104A -0.0324008417267021 A57A-A110A -0.032450595019581 M60A-V114A -0.0346837233880959 F77A-L115A -0.0360167965303626 V58A-G78A -0.0367740017202323 T80A-C89A -0.038383310190865 L81A-S116A -0.0396264952689167 L81A-I112A -0.0398052037074574 M55A-L107A -0.0401136836524678 M60A-F111A -0.0403713825903971 F82A-I112A -0.040410780887985 A57A-G108A -0.0405982830153206 L59A-V100A -0.0416401561398025 M60A-V103A -0.0426357582360559 G54A-T99A -0.0434431492336778 V84A-A109A -0.0445035080650307 D67A-G78A -0.0459240951233935 M55A-S61A -0.0462013318075207 C89A-G106A -0.0467129278217531 D67A-F111A -0.0475978643338086 S85A-F111A -0.0500395367471977 S85A-V93A -0.051225269881753 V58A-S85A -0.0516595142899656 F77A-S85A -0.0529445693082367 D67A-A118A -0.0534624148869263 F98A-G106A -0.0553420722293898 V58A-F82A -0.0557694978138157 V58A-S116A -0.0576310341881832 T80A-V88A -0.058237745380862 C62A-L117A -0.0583276133145914 A110A-S116A -0.0612386609611395 S86A-V93A -0.0642701367396636 A57A-S86A -0.0659745978127004 M55A-V100A -0.0661726493633554 I87A-I104A -0.0667851306271068 A109A-V114A -0.0684446967340624 D67A-I112A -0.0724593086248415 A63A-S113A -0.0733009436474719 F82A-S116A -0.0739422107273355 V58A-V114A -0.074005017258953 G54A-C89A -0.0752803672983698 F77A-S86A -0.0759172935255583 V79A-I104A -0.0759499902625738 M60A-L81A -0.07674201325678 G66A-V79A -0.0768868491233494 C89A-L107A -0.0774769030768714 G106A-V114A -0.0777140069383533 F77A-L107A -0.078479421962836 V88A-G108A -0.0785894364968041 S85A-P92A -0.0790467007651143 A56A-T99A -0.08098904047558 T80A-A109A -0.0811957836510251 T80A-S85A -0.0814320787723859 C89A-V100A -0.0815518120921377 V84A-L91A -0.0817095511484878 T99A-L107A -0.0825622395950023 C89A-A101A -0.0832476826945721 M60A-L115A -0.0844475283826542 L59A-I104A -0.0851201106895259 I87A-Q105A -0.0856782539497218 I87A-R102A -0.0861798653595303 V83A-L107A -0.0864993846359985 V83A-V90A -0.0872330271246087 L65A-F77A -0.0872723800303059 V88A-V103A -0.0876289542566109 F77A-S116A -0.0880946991727276 S94A-T99A -0.0884557355278925 L59A-G78A -0.0887060591073183 G78A-F111A -0.0907803752405432 S61A-V79A -0.0924622161287871 L59A-I112A -0.0934978721425035 L65A-A109A -0.0942127076828161 G78A-V83A -0.0944537776873489 V79A-L117A -0.095175091104065 V90A-V100A -0.095824912497244 S61A-R102A -0.0976203045896951 G78A-I112A -0.0997986820376155 S94A-V103A -0.100067037100069 V90A-F98A -0.101613439240063 F82A-A110A -0.102155358079044 L107A-S116A -0.10334450771603 V83A-L91A -0.103888824216338 V97A-G106A -0.10394369064538 F77A-I112A -0.104644181340786 L59A-G66A -0.105637659703583 A57A-V100A -0.106219163634389 L64A-S116A -0.107279836873411 G54A-F111A -0.107328138734072 V79A-A109A -0.10840198522325 C62A-D67A -0.108969671497146 S85A-F98A -0.109521509664825 L81A-V100A -0.110861633851239 G54A-I112A -0.1109814524955 V88A-L107A -0.111016946863924 L64A-F111A -0.112049018591059 G78A-I87A -0.112315962714489 V79A-A110A -0.114214794271588 D67A-F77A -0.114642898970327 G54A-G108A -0.114780417635865 M55A-R102A -0.11575100328428 A57A-S113A -0.115761304903637 V58A-L64A -0.116013704576447 S86A-F98A -0.118256486937412 L107A-V114A -0.118733934761219 L64A-F77A -0.119693247338339 G78A-G106A -0.123341176489031 V103A-F111A -0.124219047759041 L91A-T99A -0.124429489714787 S85A-G108A -0.125432354671223 F77A-G106A -0.128340592439159 S61A-G108A -0.128674099484054 S85A-G106A -0.129715819658041 G66A-S116A -0.130293032496961 G106A-F111A -0.1308578161138 V103A-G108A -0.130902432956462 A56A-F98A -0.132137575545075 L59A-F111A -0.132252293016135 G54A-F98A -0.132917182309611 V58A-I104A -0.134013544087928 V79A-V84A -0.134420942916524 F82A-C89A -0.135107904224762 S61A-G66A -0.137177608015479 C89A-V103A -0.138562305437215 G78A-S116A 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