[Fri Aug 26 17:11:22 2016] >Input file: TMA5U661M1D.pdb >TM segments: 60-82 MAIDEN score = -7.9081 Below is the ranking list of the residue pairs and their related pseudo-energy (the lower, the better). This includes inter-chain residue pairs. The maximum (least favorable) pairwise energy value has been set to 10. See the MAIDEN software article: Postic,G., Ghouzam,Y. and Gelly,J.C. (2015) Biochimie, 115, 155–161. ----------- ---------------- Calpha pair Empirical energy ----------- ---------------- I68 -W73 0.395459507764681 L65 -Y70 0.329439634962023 P61 -Y70 0.295303639223633 A72 -L77 0.285631340816483 H74 -L81 0.257753242730529 P61 -A66 0.220051096717887 I68 -G76 0.202826262735218 G71 -S79 0.128544562852845 I68 -L77 0.126413240278463 N75 -L80 0.122653290343813 L63 -Y70 0.103770682804101 A69 -S79 0.100249176159919 A62 -Y70 0.0923046532315532 A72 -L80 0.0716462057883911 A67 -N75 0.060859631488686 A72 -L81 0.0480187821499567 A62 -A72 0.0470955274372011 A66 -H74 0.0441626935027054 G71 -L80 0.0434017650728318 A72 -I82 0.0370692651508779 Y70 -N75 0.0333744037447308 A67 -H74 0.0308917404189701 I64 -A72 0.0229288113271928 A67 -G76 0.0185455451621576 V60 -I68 0.0131383018511464 H74 -I82 0.0113815994555754 V60 -A67 0.00537531653193057 A62 -G71 -0.0115544305222928 L63 -G71 -0.0127348160520078 V60 -A69 -0.0161308881651241 A66 -N75 -0.0170897174202476 Y70 -I78 -0.0201539686573957 G76 -I82 -0.0211408424606692 A69 -L77 -0.0343766591063899 P61 -G71 -0.0361083459565315 I64 -W73 -0.0502042227030639 A62 -I68 -0.0572277910177004 A67 -A72 -0.0620810980157671 Y70 -L77 -0.0771876448166751 P61 -A69 -0.0905635848726272 Y70 -S79 -0.101916115175863 A69 -N75 -0.11028901733602 L65 -W73 -0.111936998195397 P61 -A67 -0.11768462973503 L65 -N75 -0.129457339586043 L65 -G71 -0.131994516069361 W73 -I82 -0.133127111712951 A67 -W73 -0.135086459829497 L63 -A72 -0.150627372972559 A69 -G76 -0.150698239919201 A69 -I78 -0.15502617168479 G71 -G76 -0.1560937040107 G71 -I78 -0.164428008877575 I64 -Y70 -0.169697577592441 L63 -A69 -0.175109457470062 A62 -A69 -0.183726911336525 W73 -S79 -0.189159262774616 W73 -I78 -0.200795756745117 P61 -I68 -0.20345424625801 Y70 -G76 -0.220674149755643 V60 -A66 -0.222918778872784 I64 -G71 -0.223562644861971 A72 -I78 -0.226941425616968 A72 -S79 -0.22775670527286 G76 -L81 -0.231335838240289 H74 -L80 -0.236713493186079 A66 -G71 -0.241899907358088 A66 -A72 -0.242069363819534 L65 -A72 -0.246430385267597 N75 -L81 -0.248980110880306 L65 -H74 -0.257274775768774 A66 -W73 -0.259300083171823 I64 -A69 -0.271230858526042 G71 -L77 -0.277623196696339 L77 -I82 -0.290625356827571 W73 -L81 -0.30256582871909 W73 -L80 -0.30942011659256 N75 -I82 -0.320498854640174 I68 -N75 -0.321073833151536 V60 -L65 -0.355886275153328 H74 -S79 -0.371417258057758 L63 -I68 -0.38259373541735 A62 -A67 -0.384946865288361 A69 -H74 -0.482879855876671 I68 -H74 -0.522954315848355