[Fri Aug 26 17:13:21 2016] >Input file: TMA5U7B9M1D.pdb >TM segments: 39-53_ 90-103_ 113-129 MAIDEN score = -10.2868 Below is the ranking list of the residue pairs and their related pseudo-energy (the lower, the better). This includes inter-chain residue pairs. The maximum (least favorable) pairwise energy value has been set to 10. See the MAIDEN software article: Postic,G., Ghouzam,Y. and Gelly,J.C. (2015) Biochimie, 115, 155–161. ----------- ---------------- Calpha pair Empirical energy ----------- ---------------- I103 -L113 1.21683842753177 T50 -L93 0.749269188111608 V43 -E101 0.748123943618852 T50 -I91 0.739076341139353 A46 -I94 0.656503666659411 A46 -Y95 0.523412354966406 V43 -V98 0.493681617321139 A42 -V97 0.418446954929878 L39 -V98 0.406506242879099 V99 -L120 0.392010979720872 I103 -A117 0.38710350292987 W51 -S90 0.38139485970666 A123 -A128 0.376489020627744 T50 -I94 0.371050374835804 R47 -L52 0.370790572720414 V49 -I94 0.36859499681985 I103 -P116 0.36797029586955 V119 -L124 0.364527488881954 R47 -L93 0.358189057609582 L124 -Q129 0.312364494706559 Y95 -Q129 0.311918957245473 Y100 -G115 0.30512969025686 L39 -V102 0.302048854983484 A46 -L93 0.281746758464159 V49 -L93 0.277829121498176 Y95 -G121 0.270309783343267 V49 -V97 0.265926350183003 R47 -I91 0.265746736909348 E101 -P116 0.263294725293444 R47 -I94 0.232602502644983 V49 -Y100 0.223048550048775 R47 -Y95 0.220986466138414 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