[Mon Aug 29 17:26:12 2016] >Input file: TMA6FAW3M1G.pdb >TM segments: 554-565_ 596-606 MAIDEN score = -1.0167 Below is the ranking list of the residue pairs and their related pseudo-energy (the lower, the better). This includes inter-chain residue pairs. The maximum (least favorable) pairwise energy value has been set to 10. See the MAIDEN software article: Postic,G., Ghouzam,Y. and Gelly,J.C. (2015) Biochimie, 115, 155–161. ----------- ---------------- Calpha pair Empirical energy ----------- ---------------- R601 -M606 0.288353719493355 E596 -R601 0.174769347268878 N559 -D564 0.110980283225007 A557 -K562 0.105650633774687 I565 -G604 0.100177912605542 I558 -M597 0.0790426086813785 I565 -V602 0.0730699884377066 L600 -E605 0.0705926201179468 I558 -F563 0.0551099421516188 A554 -L561 0.0482196009017493 A554 -A560 0.046566690599938 Q599 -G604 0.0434823679906389 M555 -L561 0.0420632074851133 M555 -V602 0.0277421442177292 M555 -E605 0.0203227904576226 E596 -V603 0.0183468249951323 D564 -G604 0.0019929552675908 I565 -V603 -0.00174173959726565 I558 -E596 -0.0092437377418213 E598 -V603 -0.014762331115084 T556 -K562 -0.0206991257154483 A560 -E596 -0.0346170390670604 F563 -V603 -0.0357135343942039 L600 -M606 -0.050723222286889 L561 -R601 -0.0700005323183044 I565 -R601 -0.0826893968999025 L561 -E596 -0.0828725118725626 F563 -V602 -0.0853453068974259 F563 -R601 -0.111621437176598 M597 -V602 -0.12463589932435 M555 -K562 -0.15934531727634 M597 -V603 -0.161352237073538 T556 -L561 -0.19488709521298 A554 -N559 -0.210339420500849 E596 -V602 -0.231968593965364 M555 -M606 -0.241694744961992 M555 -A560 -0.398942838310883