[Fri Aug 26 17:27:07 2016] >Input file: TMA6GHP4M2D.pdb >TM segments: 425-475 MAIDEN score = 7.9127 Below is the ranking list of the residue pairs and their related pseudo-energy (the lower, the better). This includes inter-chain residue pairs. The maximum (least favorable) pairwise energy value has been set to 10. See the MAIDEN software article: Postic,G., Ghouzam,Y. and Gelly,J.C. (2015) Biochimie, 115, 155–161. ----------- ---------------- Calpha pair Empirical energy ----------- ---------------- L428 -E433 8.8663574920767 I427 -L434 1.11255805947287 L428 -L434 0.893555196413901 L429 -L434 0.846962624241538 I427 -S435 0.749365932929599 R455 -V460 0.693418322144798 P439 -R445 0.577575300373585 L428 -S435 0.536261967165064 I449 -R455 0.488435691745119 R426 -L434 0.440962554799825 H441 -D468 0.421542071706339 L434 -T444 0.411516990083707 L434 -R443 0.409009344845915 M458 -N463 0.370836658481233 I449 -A454 0.363506141722445 D438 -T444 0.32248732574084 D438 -V448 0.272774338910736 W437 -T444 0.253057175369851 L429 -S435 0.249173002855761 G465 -D470 0.232344797856558 G461 -G467 0.231851983521314 G425 -E436 0.230832138540809 P439 -V446 0.228884150530117 Y456 -G467 0.224355334662897 D438 -V446 0.223632733642765 E436 -R443 0.215913828447825 D430 -T444 0.193002946633291 D430 -R445 0.187068488673899 L429 -P439 0.182207779524473 M458 -G465 0.181551953218311 G425 -L434 0.178680056295391 Y456 -E462 0.174921201631942 E433 -P439 0.168142350905438 A454 -G467 0.164256222613001 D470 -E475 0.162476358305882 G447 -G467 0.161956344582021 V448 -R455 0.153884970429 V448 -A466 0.153458283650859 G465 -F472 0.150108322525083 L429 -T444 0.148608864011863 D430 -R443 0.14584709230164 G447 -A466 0.141620232276766 R426 -W437 0.131063294435728 R455 -N463 0.125715841679146 H441 -V448 0.124335087001577 H441 -V446 0.123363124691154 G461 -D474 0.119612697748824 Q440 -I449 0.118981023716217 L434 -Q440 0.117684707874468 V448 -V464 0.117075519158286 Q457 -N463 0.113590090756189 V460 -G465 0.113571308846947 F450 -Q457 0.11130833375794 A454 -A466 0.109041233253065 S435 -V446 0.101170688776256 L429 -W437 0.101152214674151 R455 -E462 0.0985469197905244 T444 -G467 0.09795436653416 I427 -E433 0.0928623099729249 Q440 -A466 0.0926370663844027 G447 -A454 0.088341628694951 A466 -S473 0.0879478274465169 L428 -R443 0.0858612962038776 L432 -V446 0.0858596417399946 G447 -G465 0.0844320983921696 V448 -G467 0.081777394808662 L442 -G447 0.0808472023831655 A454 -G465 0.0808273485670963 V460 -G467 0.0758057916413593 S435 -H441 0.0753302008986603 G425 -G431 0.0750896988155156 E462 -D468 0.0747880130409866 F453 -L459 0.0745346934282378 H441 -A466 0.0715902754745525 L429 -V446 0.0712230654711483 G467 -S473 0.0705802686947723 P439 -V448 0.0675906138377143 P439 -F450 0.0629347892780636 D452 -Q457 0.0613502518101154 L428 -E436 0.060331441284462 Q440 -D468 0.0584728595338002 D430 -S435 0.0581037175540555 G467 -E475 0.0544734215819445 L442 -A466 0.0528509068343865 L434 -L442 0.0485042721607973 L429 -G447 0.0484617220012797 E433 -R445 0.0477323677245343 F453 -M458 0.0474858683999901 V448 -G465 0.0465627690069674 S435 -L442 0.0460519137450266 V446 -A466 0.0428826992880253 G461 -H471 0.0413129738003778 G425 -L432 0.0370389521541121 V464 -S473 0.0353413714649919 G447 -R455 0.035221697761755 V446 -G467 0.0339407924367654 R443 -V448 0.0338572821340167 G431 -E436 0.0325534596202677 L432 -R445 0.0305321601298298 H441 -G447 0.0304409325349573 P439 -I449 0.0302774591556441 E462 -S473 0.0296092591450847 G461 -S473 0.0293244703826439 Q457 -E462 0.0285301216570604 D430 -V446 0.028409543714953 A454 -L459 0.0278919566531668 N463 -D474 0.0267036596268637 E433 -D438 0.0260098450746371 A454 -G461 0.0248846120388126 S435 -Q440 0.0247541181655437 F450 -Y456 0.0239331274242431 R426 -P439 0.0232984764313153 I449 -V464 0.0226117546096738 L432 -L442 0.0219766676854567 F453 -A466 0.0217468470686768 A454 -V460 0.0181589029593505 W437 -V446 0.0180661494539418 E462 -V469 0.0176765199695781 P439 -A466 0.0173394258219064 D468 -E475 0.015901058392803 L459 -G467 0.0152405355402414 W437 -R445 0.0141208098848056 G461 -V469 0.0139504238089589 L434 -H441 0.0122561168074858 R426 -G431 0.0122313337185286 L434 -V448 0.0120840846068533 L432 -P439 0.0117103403159415 N463 -D468 0.0115718954327813 R445 -G467 0.00965548563710138 E436 -L442 0.00959705461729743 M458 -A466 0.00940878913959509 G465 -D474 0.00881195845374805 V464 -H471 0.00756861872850756 F453 -V460 0.00640091563242251 Q457 -A466 0.00633862691549325 L429 -V448 0.00534026412877608 W437 -L442 0.0048778857151861 R426 -T444 0.00460114235168874 S435 -R443 0.0041223669928403 I427 -P439 0.00324974123701027 D468 -D474 0.00318215541754374 D438 -R445 0.000481489656459111 A466 -H471 -0.000469672671284171 T444 -D468 -0.000726331200776809 G431 -T444 -0.00244436311801888 R443 -G467 -0.00326026351624753 L428 -P439 -0.00329871477500721 G465 -E475 -0.00644704537614738 E433 -R443 -0.00982932608725812 L434 -G447 -0.0102373105283506 I427 -R445 -0.0113595792599548 Q457 -V464 -0.0120620813692429 A454 -V464 -0.0122375196336708 P439 -D468 -0.0134905509032122 I449 -A466 -0.0156298687688998 H441 -V469 -0.0160596263436013 L432 -R443 -0.0162337584120031 Y456 -G465 -0.016463655834201 G447 -F453 -0.0167490976170468 Q457 -G465 -0.0180250794404664 R455 -G465 -0.0204636861045975 R426 -E433 -0.0217749571702406 I449 -N463 -0.0226156752610798 M458 -V464 -0.022726085701493 S435 -R445 -0.0231391970557748 F453 -V464 -0.0237765290186694 V460 -E475 -0.025721228946479 G447 -D468 -0.0258849821887217 R455 -V464 -0.0276830432342807 Q440 -G467 -0.0304520383822584 P439 -G467 -0.0317026346663467 V448 -Y456 -0.0318320525687934 N463 -V469 -0.0322736039130285 D438 -G447 -0.0331655968547877 G431 -V446 -0.0337749667114204 I427 -R443 -0.0342061417636113 D468 -S473 -0.0343472761130697 Q440 -G447 -0.0353336738017165 Y456 -G461 -0.0363913839368077 F453 -N463 -0.0377850609822588 T444 -I449 -0.0442303021126926 V469 -E475 -0.0451681136721591 W437 -G447 -0.0492405206533846 L442 -G465 -0.0497823961698494 R426 -E436 -0.0519592393448642 G461 -F472 -0.0528824296980552 G461 -D468 -0.0563530783970179 L429 -R443 -0.056425596334325 G447 -V464 -0.0570432930724101 E433 -V446 -0.0577784477284853 V448 -N463 -0.061776897912837 N463 -E475 -0.0642222905004787 A454 -E462 -0.0662814644021799 L442 -V448 -0.0679067724915114 Q451 -Y456 -0.0689611510045092 L428 -D438 -0.070285496802478 A454 -N463 -0.0713455598014452 R455 -G467 -0.0720984342152526 I449 -Y456 -0.0785290241030259 L429 -E436 -0.0820458566086208 L432 -D438 -0.0845944908905977 L459 -A466 -0.0847689111000705 G467 -F472 -0.0860195959077528 L429 -D438 -0.0862748415308889 V464 -V469 -0.0908084086893888 I449 -G467 -0.0921092421836001 E462 -D474 -0.0952856157802998 R426 -D438 -0.0962715534914389 L442 -V469 -0.0971615821423804 G447 -N463 -0.101396362204301 R443 -D468 -0.101873420544638 L442 -I449 -0.102640482961827 G431 -R445 -0.106195838890099 R445 -D468 -0.112863365703273 L428 -W437 -0.11826103385431 Q440 -F450 -0.119880562943957 A466 -E475 -0.120774328335735 V448 -F453 -0.123910272348391 E433 -T444 -0.125224498722457 G461 -E475 -0.125531386756159 Q440 -R445 -0.128955628859313 I427 -T444 -0.129216686671117 D430 -W437 -0.131899868922621 E462 -E475 -0.134307494492562 F450 -R455 -0.135809379552769 L428 -T444 -0.136882527294864 G425 -E433 -0.13713803078724 L459 -G465 -0.139602597135966 I427 -D438 -0.141461586478713 Y456 -V464 -0.143924654702674 V464 -F472 -0.148812793062243 L428 -R445 -0.148876808430275 G465 -S473 -0.149122545411498 L429 -L442 -0.149337436314239 E433 -L442 -0.14992846277753 E436 -H441 -0.15144124739451 E462 -H471 -0.151514547314284 A466 -D474 -0.154720856501487 R455 -G461 -0.159069808572232 E436 -V446 -0.159483726857315 L434 -P439 -0.160559296416943 L459 -V464 -0.161916931012566 Y456 -A466 -0.166000024476071 R455 -A466 -0.169178655502416 E436 -R445 -0.171377322446035 G467 -D474 -0.17482122230497 R445 -A466 -0.175269516906237 A466 -F472 -0.178036169667724 V464 -D470 -0.184022794274833 I427 -V446 -0.195448894500829 L434 -V446 -0.195490440152755 E462 -F472 -0.199139376397188 E462 -D470 -0.19957943441838 G461 -A466 -0.204994640236809 E462 -G467 -0.206093108960739 E436 -T444 -0.2061927095588 R445 -V469 -0.214069100241749 P439 -G447 -0.215427476635793 G425 -W437 -0.219948073441091 L429 -R445 -0.220351085424872 G431 -W437 -0.220372392392863 N463 -H471 -0.221913476870258 L428 -V446 -0.227090311897884 R426 -L432 -0.228618244219776 V460 -D474 -0.230621833086286 I427 -E436 -0.23078824761359 I427 -L432 -0.233479360481464 L434 -R445 -0.240130903677493 Y456 -N463 -0.242395191203262 L432 -W437 -0.244949464925015 G465 -H471 -0.249829911494634 G425 -S435 -0.251087119729674 L442 -D468 -0.254399690809817 H441 -G467 -0.255617401731842 D430 -E436 -0.256354433339951 Q440 -V448 -0.273737396949032 S435 -T444 -0.276160352910883 P439 -T444 -0.286826900598348 V464 -D474 -0.287045198586954 L432 -T444 -0.291750094784488 W437 -R443 -0.323392504658828 V464 -E475 -0.342896383130298 V469 -D474 -0.342998385510572 D438 -R443 -0.347798983180301 V460 -A466 -0.351532220161219 I427 -W437 -0.356268566585059 V448 -A454 -0.3692335743422 L442 -G467 -0.395561172314526 Q440 -V446 -0.466354700611872 R426 -S435 -0.589822906485657