[Mon Aug 29 17:34:14 2016] >Input file: TMA6GR87M10G.pdb >TM segments: 55-61_ 85-101_ 108-113_ 133-142 MAIDEN score = 21.7979 Below is the ranking list of the residue pairs and their related pseudo-energy (the lower, the better). This includes inter-chain residue pairs. The maximum (least favorable) pairwise energy value has been set to 10. See the MAIDEN software article: Postic,G., Ghouzam,Y. and Gelly,J.C. (2015) Biochimie, 115, 155–161. ----------- ---------------- Calpha pair Empirical energy ----------- ---------------- V57 -N110 2.33962206148 V57 -I139 1.76276075279759 V55 -P108 1.44782484941248 V56 -L140 1.32010737737081 V55 -D141 1.30004489953741 L58 -I139 1.21842816406241 V56 -V109 1.17645246155647 F60 -F136 1.11896308268637 W61 -L134 1.0440199465276 W61 -F136 0.995395674999804 F60 -I113 0.959387867996431 L58 -V138 0.868140317093536 N59 -T137 0.848303959729048 V56 -I139 0.818325027288738 V57 -V138 0.804097633916555 V57 -V109 0.801455473478426 L58 -P112 0.767475488779413 V55 -V109 0.730834327641041 V56 -E142 0.662978719965419 V56 -Y111 0.662862406461707 V57 -T137 0.641642329360977 W61 -I113 0.590446163644019 F60 -P135 0.590149630306354 V57 -L140 0.583352639447683 V55 -L140 0.581365324736861 F60 -L134 0.576123637032405 F60 -P112 0.569520917191906 F60 -T137 0.522046947275896 L58 -I113 0.506681350780855 L58 -F136 0.502872252390334 L58 -L140 0.407487809361591 V55 -I139 0.356521095537222 F60 -G133 0.307924242510957 L58 -Y111 0.299153620068335 V57 -Y111 0.271386889013096 N59 -N110 0.260439303077025 V55 -E142 0.256574816723342 P108 -T137 0.254364531093706 F60 -V138 0.250245612688955 Y111 -P135 0.222281218079819 P108 -E142 0.207432346833694 G91 -P97 0.195761196698302 G133 -V138 0.194559518875039 E88 -A93 0.186314897330328 S98 -N110 0.182247793982709 V57 -P108 0.176254451438703 I113 -I139 0.159421381108698 N59 -P135 0.156112311593701 W61 -P135 0.148808337008198 P112 -T137 0.148732936795347 W61 -N110 0.142378088744621 N86 -D95 0.137470674189438 N86 -A93 0.131871091631769 N86 -S96 0.126466593338807 I113 -L140 0.125306198695364 V56 -P108 0.125101044967606 N59 -I139 0.12043972406957 N59 -D141 0.104970417048107 L58 -N110 0.104739130629554 A93 -V100 0.102983075931915 V109 -E142 0.101444930997541 Q101 -N110 0.100394281372099 F60 -Y111 0.0949130338682433 L134 -I139 0.091863926020409 V100 -V109 0.0884614003922204 N86 -I92 0.0881769743274399 N110 -E142 0.0879827815603056 L58 -L134 0.0878480054833235 N59 -P108 0.0835941485722609 I92 -P97 0.0834431422412639 W61 -Y111 0.0808820932795529 A93 -N99 0.0797374725490276 L89 -I94 0.0766768260721853 G91 -S96 0.075375130432759 I94 -V100 0.0711679034492638 S98 -P108 0.0707836486118776 Q85 -I90 0.0698384649726054 Y111 -F136 0.0676732421437682 N59 -V138 0.0638128567748446 L58 -G133 0.0600271256240131 V87 -A93 0.0557256495280019 D95 -Q101 0.0524149854536498 W61 -G133 0.0511469075521105 P112 -P135 0.0506437063412655 V57 -G133 0.0465487694477238 P112 -V138 0.0456585821773778 N110 -I139 0.0401727350090688 W61 -P112 0.0393701466511021 V56 -F136 0.0384105266236844 D95 -V100 0.0377117363226471 N110 -T137 0.0360370125494928 V57 -V100 0.0358367005828466 V100 -P108 0.0296921150305862 N59 -L134 0.0283239484706135 N110 -D141 0.0270369019911392 V57 -D141 0.0259615457060303 Q101 -T137 0.0232737876505351 W61 -V138 0.0208940044950069 P112 -L134 0.0206214626273642 N59 -I113 0.0174194909040519 I92 -S98 0.015179126484469 V56 -V138 0.0144106479158204 A93 -Q101 0.00925788803356542 V56 -N110 0.00890884922551605 Q85 -I92 0.0083871773174895 P112 -I139 0.00328191920158272 V55 -T137 -0.00112189869742529 Q101 -V109 -0.00136317128302466 V57 -Q101 -0.00327530799711484 Q85 -G91 -0.00615761588766173 V57 -E142 -0.00696732457877225 L58 -E142 -0.00735146756201466 E88 -I94 -0.0136040647909947 P112 -L140 -0.015964487691857 N59 -P112 -0.0210760143872601 F60 -I139 -0.0299401117734988 Q101 -Y111 -0.0330136883281709 I90 -S96 -0.0335848863019611 P108 -I139 -0.0338877118121981 V57 -P135 -0.0352034981742619 V100 -I139 -0.0370728413244912 F60 -V109 -0.039061571545238 Q85 -A93 -0.0427783937962429 G133 -I139 -0.0444499491760415 P112 -F136 -0.0458229295230915 V56 -Q101 -0.0478531495117696 N110 -P135 -0.0561006205768595 V100 -N110 -0.0574924164799753 V55 -Q101 -0.0582477142638886 I113 -P135 -0.0624073964089442 F60 -N110 -0.0636288435628962 Y111 -D141 -0.0641525772536901 P108 -V138 -0.0678222214481325 P112 -G133 -0.0690861810628658 V100 -T137 -0.069162388013114 Y111 -E142 -0.0709782123474354 Q101 -P112 -0.0733077638211421 F60 -L140 -0.0756910946974907 V109 -T137 -0.0761575269493142 V55 -P112 -0.0762644015718212 L58 -Q101 -0.0792236639490085 I113 -V138 -0.080902802547687 Y111 -T137 -0.0869167586866415 V55 -N110 -0.0869254465558633 Y111 -G133 -0.0904198433563481 Y111 -L140 -0.0970183608926058 N59 -V100 -0.102565202388414 V57 -L134 -0.103023884841836 V87 -I92 -0.10348804939319 V109 -V138 -0.108582076753581 N59 -Q101 -0.10910761131111 I92 -N99 -0.112053094339588 L58 -T137 -0.113904779525448 L89 -D95 -0.115954825126473 N99 -P108 -0.116886225482579 I94 -Q101 -0.12188384452132 N59 -G133 -0.129943638285287 N110 -F136 -0.132024995297026 W61 -I139 -0.133905558284461 I113 -L134 -0.135912651312574 N59 -L140 -0.137870173086686 V109 -D141 -0.141919595347282 I90 -D95 -0.150716108447498 Y111 -I139 -0.152721173854707 P97 -N110 -0.157142380351797 S96 -Q101 -0.164907490720065 N86 -G91 -0.166152017475473 V56 -T137 -0.166890432475427 V57 -I113 -0.170392257435774 I113 -F136 -0.178513226173752 E88 -D95 -0.185526921471407 V56 -P112 -0.189221321659242 N59 -V109 -0.191532128413765 Y111 -L134 -0.199725337370539 A93 -S98 -0.202055219950759 I113 -T137 -0.211248412235605 P108 -D141 -0.212722869894585 I94 -N99 -0.214989114843447 V56 -I113 -0.215967031381869 N110 -L140 -0.230750529889439 N59 -Y111 -0.238906777728226 V57 -P112 -0.257884821800586 I113 -G133 -0.259738950231105 W61 -T137 -0.262183546559851 V55 -V138 -0.275906336917169 V55 -Y111 -0.284115786892395 Y111 -V138 -0.288670465777185 N59 -F136 -0.292460135726184 L58 -D141 -0.294739679290056 N110 -V138 -0.297328175737739 L58 -V109 -0.303605996541986 L58 -P135 -0.327802194256556 V109 -I139 -0.368696907220803 V57 -F136 -0.371297958407173 P108 -L140 -0.397404170021035 V109 -L140 -0.403068034705712 V56 -D141 -0.525978198680776 L58 -P108 -0.535453812371397 Q101 -P108 -0.55709681682003