[Fri Aug 26 17:35:47 2016] >Input file: TMA6GR87M15D.pdb >TM segments: 36-65 MAIDEN score = -5.1451 Below is the ranking list of the residue pairs and their related pseudo-energy (the lower, the better). This includes inter-chain residue pairs. The maximum (least favorable) pairwise energy value has been set to 10. See the MAIDEN software article: Postic,G., Ghouzam,Y. and Gelly,J.C. (2015) Biochimie, 115, 155–161. ----------- ---------------- Calpha pair Empirical energy ----------- ---------------- L46 -L51 0.706538710295654 T37 -L48 0.664299438511444 Y36 -G49 0.584515115008234 F38 -L46 0.463219197838255 F38 -L48 0.437632703054208 F38 -S45 0.289767730161617 N59 -C65 0.279687089209079 T40 -L46 0.187011692435294 Y36 -L46 0.180431689761635 D39 -K52 0.172762746305863 T40 -T63 0.172604496142086 T40 -K52 0.168850490176619 K52 -L58 0.168458033239138 G53 -L58 0.161125048029413 A44 -G49 0.153310982546593 F38 -F60 0.120281853320842 L51 -L58 0.114646566975412 G49 -V56 0.0967832766116348 T37 -K52 0.0946122832122325 L48 -V57 0.0934694469189195 T37 -G43 0.0880435912166856 L46 -L58 0.0875998349873344 A44 -A50 0.0841914999600513 A50 -L58 0.0779442314722196 T40 -S45 0.0724897249534173 L48 -G53 0.0656140970132157 S45 -K52 0.0581130829797507 F38 -L58 0.0564363738967817 T40 -F60 0.0492910992477884 Y36 -A44 0.0397369665219043 T40 -L58 0.0380498085677914 Q42 -L51 0.0377501686950747 A50 -V56 0.0271401666805691 F38 -G43 0.0264716553316777 K52 -V57 0.0243338346518281 P41 -D47 0.0239168735317055 T40 -N59 0.0164548322317728 Y36 -K52 0.010469679284772 D39 -D47 -0.00218285712232791 D39 -G49 -0.0219279643691663 G49 -V57 -0.0221392252558559 T37 -Q42 -0.0226989044963586 G43 -L51 -0.0274873186265454 L48 -L58 -0.0294619832233711 L46 -G53 -0.0329796905958077 G49 -L58 -0.0353264742798792 P41 -L58 -0.0361355126850604 T40 -A50 -0.0372065992955726 D39 -L51 -0.0386836330332015 D39 -A50 -0.0491023497335838 T40 -G49 -0.0500419462237167 A50 -V55 -0.0525490363039895 L48 -F60 -0.054467804909673 P41 -L51 -0.0607382902317615 G49 -K54 -0.0608835998193058 T37 -L46 -0.0656581622856987 Q42 -D47 -0.0677239620973333 G49 -V55 -0.0697778069692401 Y36 -L58 -0.0699087264891727 Y36 -L51 -0.0726024749986549 Y36 -S45 -0.0731203471511306 T37 -S45 -0.0750022185422612 D47 -G53 -0.0861953841883549 D39 -T63 -0.0891947456903051 Q42 -L48 -0.0924109855942064 T37 -A50 -0.0939754358310245 T40 -D47 -0.100445042218377 L48 -V55 -0.105298567803689 G43 -L48 -0.10582439304355 F38 -G49 -0.106704648537106 A44 -L51 -0.10744228518162 P41 -T63 -0.112806387271648 F60 -C65 -0.123280545196623 D39 -F60 -0.134714371973844 L51 -N59 -0.135604844684649 F38 -N59 -0.142590909543701 D39 -L46 -0.146985366178462 P41 -L48 -0.154832104429592 F38 -A44 -0.156794692659494 D47 -L58 -0.168959889759247 F38 -K52 -0.171539338765328 D47 -K52 -0.173824913517274 D39 -L58 -0.175820588661252 F38 -A50 -0.182121074167352 L48 -N59 -0.197885611016223 S45 -A50 -0.202106378275249 L48 -K54 -0.206094771674696 D39 -L48 -0.207098827992546 S45 -L51 -0.210988828178666 L48 -V56 -0.2169999514877 T37 -L51 -0.218894886352681 L51 -V57 -0.222738261049422 T37 -A44 -0.224030990318179 N59 -W64 -0.224313392945463 F38 -L51 -0.233697634509619 L46 -K52 -0.234128081177331 Y36 -A50 -0.249877357719423 T37 -D47 -0.251548631857534 T40 -L48 -0.274487687240585 T40 -L51 -0.284372743851236 T37 -G49 -0.357486280990957 D39 -S45 -0.376145642272351 Y36 -L48 -0.379851541271977 L51 -V56 -0.404662045273836 Y36 -D47 -0.405142703351462 P41 -L46 -0.524451196652409 D39 -A44 -0.565216480731587 F38 -D47 -0.67174101560662